RetrogeneDB ID:

retro_nleu_1671

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397303.1:4247293..4247540(-)
Located in intron of:ENSNLEG00000002595
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2V2
Ensembl ID:ENSNLEG00000013382
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1671
GGTCTTGTTAGCTGTGGCCTTGAAGGTGATGAAGAAAGACACTTTCAAGGTGGACAGGTATAATTATTGGGTCACCAAGA
ACAAATTTGAAAAACAAAATATGCCGATTGAAATTAGCATGTAGAACCTAAATATCCAGAAGCTTCTTCATTGAATAAAT
TTGTAGCAAAAGTTTATGTAAACTGAATTAGTAATTCCTAGTGAAATAGTGGATGAATTGAGAATAGTGGTGTTGGTAAA
AATGGAA

ORF - retro_nleu_1671 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.12 %
Parental protein coverage: 56.55 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGTVSWGLEDDED-MTLTRWTGMIIGPPRTNYENRIYSLKVEC-GPKYPEAPPSVRFVTKINMNGINNS-S
G.VS.GLE.DE...TL.RWTG.IIG.PRTN..N.I..LK..C..PKYPEA.....FV.K...N.I.NS.S
RetrocopyGLVSCGLEGDEE<KTLSRWTGIIIGSPRTNLKNKICRLKLAC>EPKYPEASSLNKFVAKVYVN*ISNS>S
ParentalGMVDARSIPVLAKWQ
..VD...I.VL.K..
RetrocopyEIVDELRIVVLVKME

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1671 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Macropus eugenii ENSMEUG000000165811 retrocopy
Monodelphis domestica ENSMODG0000001019110 retrocopies
Mus musculus ENSMUSG000000226744 retrocopies
Nomascus leucogenys ENSNLEG000000069878 retrocopies
Nomascus leucogenys ENSNLEG00000013382 1 retrocopy
retro_nleu_1671 ,
Oryctolagus cuniculus ENSOCUG000000069331 retrocopy
Rattus norvegicus ENSRNOG000000018291 retrocopy



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