RetrogeneDB ID: | retro_mmus_2770 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:100604682..100605117(+) | ||
Located in intron of: | ENSMUSG00000035378 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000079224 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2v2 | ||
Ensembl ID: | ENSMUSG00000022674 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 2 [Source:MGI Symbol;Acc:MGI:1917870] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG |
MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG | |
Retrocopy | MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG |
Parental | SKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG |
SKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG | |
Retrocopy | SKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG |
Parental | QTYNN |
QTYNN | |
Retrocopy | QTYNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .80 RPM |
SRP007412_heart | 0 .00 RPM | 3 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .70 RPM |
SRP007412_liver | 0 .00 RPM | 5 .24 RPM |
SRP007412_testis | 0 .00 RPM | 3 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_116872 | 89 libraries | 34 libraries | 478 libraries | 344 libraries | 127 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000032182 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017749 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016581 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010191 | 10 retrocopies | |
Mus musculus | ENSMUSG00000022674 | 4 retrocopies | |
Mus musculus | ENSMUSG00000090213 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013382 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006933 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000000293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001829 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022190 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008325 | 1 retrocopy |