RetrogeneDB ID:

retro_nleu_1554

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397299.1:8557279..8557550(+)
Located in intron of:ENSNLEG00000014381
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2V1
Ensembl ID:ENSNLEG00000006987
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1554
ACAAGATGGACAGGGATGATAATTGGGCCTCAAAGAACGATTTGTGAAAGTCAAGTATACAGCCTTAAAATAGAATGTAG
CCTAAATGCCCAGAAGCACCCTGCCTTTGTAAGATTTTTAACAAAAATTAACACAAATAGGGTTAATAGTTCTAATGGAG
TGGTGGACCAAAGAGCCATATCAGTGCTAACAAAATGGCAGAATTCATGTAGCATCAAAGTTGTCCTGCAAGAGCTTTGG
TGCCTAACGATGTCTAAAAGAAAATATGAAA

ORF - retro_nleu_1554 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.49 %
Parental protein coverage: 61.22 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalTRWTGMIIGPPRTIYENRIYSLKIECG-PKYPEA-PPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN
TRWTGMIIGP.RTI.E...YSLKIEC..PK.PEA.P.FVRF.TKIN.N.VNSSNGVVD.RAISVL.KWQN
RetrocopyTRWTGMIIGPQRTICESQVYSLKIECS<PKCPEA>PAFVRFLTKINTNRVNSSNGVVDQRAISVLTKWQN
ParentalSYSIKVVLQELRRLMMS-KENMK
S.SIKVVLQEL..L.MS.KENMK
RetrocopySCSIKVVLQELWCLTMS>KENMK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1554 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 83 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000273164 retrocopies
Callithrix jacchus ENSCJAG0000003698410 retrocopies
Homo sapiens ENSG000002446874 retrocopies
Loxodonta africana ENSLAFG000000273592 retrocopies
Macaca mulatta ENSMMUG000000122286 retrocopies
Mustela putorius furoENSMPUG000000175573 retrocopies
Nomascus leucogenys ENSNLEG00000006987 8 retrocopies
Nomascus leucogenys ENSNLEG000000133821 retrocopy
Oryctolagus cuniculus ENSOCUG000000261724 retrocopies
Otolemur garnettii ENSOGAG0000002589412 retrocopies
Pan troglodytes ENSPTRG000000136151 retrocopy
Rattus norvegicus ENSRNOG0000002558021 retrocopies
Sus scrofa ENSSSCG000000306321 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000143226 retrocopies



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