RetrogeneDB ID: | retro_nleu_68 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:17051775..17052048(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000018218 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN3 | ||
Ensembl ID: | ENSNLEG00000012377 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.7 % |
Parental protein coverage: | 92.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPPPPKPEPKPRKTSAKKEPGAKISRGAKGKKEEKQEA |
MPKRK......G.D..KV.K.EP.RRSARLSAKP.PPKPEPKP.K..AKK..G.K...G.KGK......A | |
Retrocopy | MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGKKGKAD----A |
Parental | GKEGTAPSENGETKAEEAQKTE |
GKEG..P.ENG..K...AQK.E | |
Retrocopy | GKEGNNPAENGDAKTDQAQKAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007015 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012407 | 2 retrocopies | |
Felis catus | ENSFCAG00000028793 | 1 retrocopy | |
Homo sapiens | ENSG00000118418 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006910 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004351 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012377 | 2 retrocopies |
retro_nleu_68 , retro_nleu_851,
|
Otolemur garnettii | ENSOGAG00000016487 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009611 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018366 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014353 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015468 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005238 | 3 retrocopies |