Parental gene:

HMGN3, ENSFCAG00000028793

Aliases:None
Description:high mobility group nucleosomal binding domain 3 [Source:HGNC Symbol;Acc:12312]
Organism:Cat (Felis catus)
Coordinates:B2:73631941..73663232(-)


>ENSFCAG00000028793
ATGCCGAAGAGAAAGTCTCCGGAGAATACAGAGGGCAAGGATGGATCCAAAGTAACTAAACAGGAGCCCACCAGACGGTC
TGCCAGATTGTCAGCGAAACCCGCTCCACCCAAACCTGAACCTAAACCAAGAAAAACGTCTGCTAAGAAAGAACCTGGAA
CAAAGATTAACAAAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAAGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAAA
GGTGAAACTAAAGCTGAAGAGGCACAGAAAACTGAATCTGTAGATAACAAGGGAGAATGA

Library Parental gene expression (RPM)
SRP017611_brain 20 .54 RPM
SRP017611_kidney 19 .48 RPM
SRP017611_liver 0 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007015 ortholog_one2one 1 retrogene
retro_chof_2241,
Cavia porcellus ENSCPOG00000012407 ortholog_one2one 2 retrogenes
retro_cpor_1399, retro_cpor_147,
Homo sapiens ENSG00000118418 ortholog_one2one 1 retrogene
retro_hsap_231,
Gorilla gorilla ENSGGOG00000006910 ortholog_one2one 1 retrogene
retro_ggor_293,
Macaca mulatta ENSMMUG00000004351 ortholog_one2one 1 retrogene
retro_mmul_414,
Nomascus leucogenys ENSNLEG00000012377 ortholog_one2one 2 retrogenes
retro_nleu_68, retro_nleu_851,
Otolemur garnettii ENSOGAG00000016487 possible_ortholog 1 retrogene
retro_ogar_190,
Ochotona princeps ENSOPRG00000009611 ortholog_one2one 1 retrogene
retro_opri_799,
Pan troglodytes ENSPTRG00000018366 ortholog_one2one 2 retrogenes
retro_ptro_1427, retro_ptro_200,
Ictidomys tridecemlineatus ENSSTOG00000014353 ortholog_one2one 1 retrogene
retro_itri_251,
Tupaia belangeri ENSTBEG00000015468 ortholog_one2one 3 retrogenes
retro_tbel_1912, retro_tbel_4714, retro_tbel_615,
Tarsius syrichta ENSTSYG00000005238 ortholog_one2one 3 retrogenes
retro_tsyr_1569, retro_tsyr_268, retro_tsyr_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1400 72.09 86.87
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Download FASTA sequences of all ENSFCAG00000028793 retrocopies