Parental gene:

HMGN3, ENSCPOG00000012407

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:51921384..51934454(-)


>ENSCPOG00000012407
GCTAGAAAGAAACAATCTTCAGAGAATACAGAGGGCAAAGAAGGATCCAAAGTAACTAAACAGGAACCCACGAGACGATC
TGCCAGGTTGTCCACGAAACCTGCTCCACCAAAACCTGAACCTAAACCAAGAAAAACAGCTATTAAGAAAGAACCTGGAA
CAAAGATTAACAGAGGTGCTAAAGGGAAGAAGGAAGAAAAGCAGGAAGCTGGAAAGGAAGGTACTACACCGTCCGAAAAT
GGTGAAACCAAAGCTGAAGAGGCACAGAAAACTGAATCTGTAGATAACAAGGGAGAATGA

Library Parental gene expression (RPM)
SRP017611_brain 17 .77 RPM
SRP017611_kidney 18 .22 RPM
SRP017611_liver 8 .79 RPM
SRP040447_lung 22 .35 RPM
SRP040447_skeletal_muscle 8 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007015 ortholog_one2one 1 retrogene
retro_chof_2241,
Felis catus ENSFCAG00000028793 ortholog_one2one 1 retrogene
retro_fcat_1400,
Homo sapiens ENSG00000118418 ortholog_one2one 1 retrogene
retro_hsap_231,
Gorilla gorilla ENSGGOG00000006910 ortholog_one2one 1 retrogene
retro_ggor_293,
Macaca mulatta ENSMMUG00000004351 ortholog_one2one 1 retrogene
retro_mmul_414,
Nomascus leucogenys ENSNLEG00000012377 ortholog_one2one 2 retrogenes
retro_nleu_68, retro_nleu_851,
Otolemur garnettii ENSOGAG00000016487 possible_ortholog 1 retrogene
retro_ogar_190,
Ochotona princeps ENSOPRG00000009611 ortholog_one2one 1 retrogene
retro_opri_799,
Pan troglodytes ENSPTRG00000018366 ortholog_one2one 2 retrogenes
retro_ptro_1427, retro_ptro_200,
Ictidomys tridecemlineatus ENSSTOG00000014353 ortholog_one2one 1 retrogene
retro_itri_251,
Tupaia belangeri ENSTBEG00000015468 ortholog_one2one 3 retrogenes
retro_tbel_1912, retro_tbel_4714, retro_tbel_615,
Tarsius syrichta ENSTSYG00000005238 ortholog_one2one 3 retrogenes
retro_tsyr_1569, retro_tsyr_268, retro_tsyr_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_147 87.67 73.74
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2. retro_cpor_1399 69.07 97.98
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Download FASTA sequences of all ENSCPOG00000012407 retrocopies