RetrogeneDB ID: | retro_nleu_987 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397278.1:14212487..14213335(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSNLEG00000017659 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.2 % |
Parental protein coverage: | 76.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
.....PKEPE.LRKLFIG.LSFETTD.S.R.H.E.W.GTLT.CVVMR.P..KRSR...FVTY..VEEVDA | |
Retrocopy | AEDHDPKEPE*LRKLFIGVLSFETTDDS*REHLEKW<GTLTRCVVMRHPQRKRSRWLSFVTYFCVEEVDA |
Parental | AMNARPHK-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD |
A..A.PH..V.GR..EPKR.VSRE....PGAHL.VKK.F.GG.KED.EE..LR.YF..YG.IE..E.M.. | |
Retrocopy | ATCAQPHR<VGGRLLEPKRTVSREELIKPGAHLPVKKNFLGGVKEDIEEYNLRGYFAKYGNIETLEVMEN |
Parental | RGSG-KKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVR-KALSKQEMASASSSQRGRSGSGNFGGGR |
R.SG.KK.GFAFVTFDDHD.VD.IVI.QKYHT.N.HNCEV..KALSKQ.M.SA.S......GSGNF.G.R | |
Retrocopy | RQSG<KKGGFAFVTFDDHDTVDNIVI<QKYHTINWHNCEVK<KALSKQDMRSAGSQRDCGGGSGNFMGCR |
Parental | GGGFGGNDNFGRGGNFSGR-GGFGGSRG-GGGYGGSGDGYNGFGNDGGYGGGGPGYTGGSRGYGSGGQGY |
G....G..NFG.GGN...R.G..GG..G.G..YGG...GYNGF...GG..G.GPGY.....GYG.GG.GY | |
Retrocopy | GNLGCGGGNFGHGGNWWKR>GYAGGGGGSGNSYGGGDGGYNGFRGNGGNYGSGPGYSIRG-GYGGGGPGY |
Parental | GNQGSGYGGSG |
GNQG...GG.G | |
Retrocopy | GNQGGRCGGGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |