RetrogeneDB ID: | retro_hsap_1240 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:21522503..21523035(-) | ||
Located in intron of: | ENSG00000233780 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233780 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSG00000135486 | ||
Aliases: | HNRNPA1, ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, hnRNP A1, hnRNP-A1 | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 79.56 % |
Parental protein coverage: | 55.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK-ALSKQEMASASSS |
Y.EQYGK.EVIEI.TDRGSGKKRGFAF.TFDD.DSVDKIVIQKYH.VN.HNCEVRK.ALSKQ.MASASSS | |
Retrocopy | YLEQYGKMEVIEITTDRGSGKKRGFAFITFDDYDSVDKIVIQKYHNVNVHNCEVRK<ALSKQKMASASSS |
Parental | QRGRSGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYN |
Q.GRSGSGNFGG...GG...GNDNFG.GGNF..................GDGYNGFGNDGSNFGGGGSYN | |
Retrocopy | QKGRSGSGNFGGDH-GGV<HGNDNFGCGGNFXXXXXXXXXXXXXXXXXXGDGYNGFGNDGSNFGGGGSYN |
Parental | DFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQ |
DFGNYNNQSSNFGPMKGGNFGGRSSGPYG.GGQYFAKP.NQ | |
Retrocopy | DFGNYNNQSSNFGPMKGGNFGGRSSGPYGDGGQYFAKP*NQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 775 .80 RPM |
bodymap2_adrenal | 0 .04 RPM | 1006 .81 RPM |
bodymap2_brain | 0 .02 RPM | 373 .10 RPM |
bodymap2_breast | 0 .00 RPM | 438 .74 RPM |
bodymap2_colon | 0 .00 RPM | 730 .72 RPM |
bodymap2_heart | 0 .00 RPM | 200 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 336 .99 RPM |
bodymap2_liver | 0 .00 RPM | 126 .11 RPM |
bodymap2_lung | 0 .00 RPM | 423 .66 RPM |
bodymap2_lymph_node | 0 .00 RPM | 358 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 1611 .66 RPM |
bodymap2_prostate | 0 .00 RPM | 619 .57 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 321 .98 RPM |
bodymap2_testis | 0 .06 RPM | 521 .76 RPM |
bodymap2_thyroid | 0 .00 RPM | 609 .76 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 596 .21 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |