RetrogeneDB ID: | retro_tbel_1967 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_6077:341546..342145(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSTBEG00000008238 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 85.85 % |
Parental protein coverage: | 54.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEE-V |
MSKSESPKEPEQLRKLFIGGLSFET.DESLRSH.EQW.GTLTDCVVM.DPNT....GF.......VEE.V | |
Retrocopy | MSKSESPKEPEQLRKLFIGGLSFETPDESLRSHLEQW<GTLTDCVVM*DPNTS-AQGFVCHVWPPVEE>V |
Parental | DAAMNARPHKVDGRVV-EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM |
DAA.....H.VDGRVV...KRAVSREDSQRPGAHLTVKKIF.GGIKEDTEEHHLRDYFEQYGKIEVIEIM | |
Retrocopy | DAA*-MQIHMVDGRVV<DSKRAVSREDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIM |
Parental | TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSPRGRSGSGNF |
TDRGS.KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK.EMAS.SSSPRGRSGSGNF | |
Retrocopy | TDRGSDKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK*EMASTSSSPRGRSGSGNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |