RetrogeneDB - Parental gene ENSFCAG00000010150 details

                            
>ENSFCAG00000010150
ATGTCTAAGTCAGAGTCTCCCAAAGAGCCTGAACAGCTGCGGAAGCTTTTCATTGGAGGTTTGAGCTTTGAAACAACCGA

TGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACGCTTACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT

CCAGAGGCTTTGGGTTTGTCACCTATGCCACTGTGGAAGAGGTGGATGCAGCCATGAATGCAAGGCCACACAAGGTGGAT

GGAAGAGTTGTGGAACCAAAGAGGGCTGTCTCGAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT

TTTTGTCGGTGGCATTAAAGAAGACACTGAAGAACATCATCTAAGAGATTATTTTGAACAGTATGGGAAAATTGAAGTGA

TTGAAATCATGACTGACCGAGGCAGTGGCAAAAAGAGAGGCTTTGCTTTTGTGACCTTTGATGACCATGACTCTGTAGAC

AAGATTGTCATTCAAAAATACCATACTGTGAACGGCCACAACTGTGAAGTAAGGAAAGCTTTATCTAAGCAAGAGATGGC

TAGTGCTTCTTCCAGCCAAAGAGGTCGAAGTGGTTCTGGGAACTTCGGTGGTGGTCGTGGAGGTGGTTTTGGTGGGAATG

ACAACTTTGGCCGTGGAGGAAACTTCAGTGGGCGAGGTGGCTTTGGCGGCAGTCGAGGTGGTGGTGGATATGGTGGCAGT

GGGGATGGCTATAACGGATTTGGTAACGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTA

TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG

GAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAACTTTGGAGGTGGTGGAAGCTATAATGATTTTGGCAATTACAAC

AATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGCCA

ATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTT

AA

Library	Parental gene expression (RPM)
SRP017611_brain	171 .58 RPM
SRP017611_kidney	293 .92 RPM
SRP017611_liver	187 .83 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000001553	ortholog_one2one	20 retrogenes	retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Cavia porcellus	ENSCPOG00000020972	possible_ortholog	1 retrogene	retro_cpor_1078,
Equus caballus	ENSECAG00000008676	ortholog_one2one	1 retrogene	retro_ecab_74,
Felis catus	ENSFCAG00000000455	other_paralog	1 retrogene	retro_fcat_1568,
Felis catus	ENSFCAG00000012146	within_species_paralog	5 retrogenes	retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Felis catus	ENSFCAG00000027765	other_paralog	1 retrogene	retro_fcat_692,
Homo sapiens	ENSG00000135486	ortholog_one2one	57 retrogenes	retro_hsap_1021, retro_hsap_1042, retro_hsap_1082, retro_hsap_1240, retro_hsap_1276, retro_hsap_1282, retro_hsap_1287, retro_hsap_1481, retro_hsap_158, retro_hsap_1584, retro_hsap_1613, retro_hsap_1638, retro_hsap_1711, retro_hsap_1899, retro_hsap_1933, retro_hsap_2002, retro_hsap_2029, retro_hsap_2091, retro_hsap_2096, retro_hsap_2197, retro_hsap_2347, retro_hsap_2379, retro_hsap_2636, retro_hsap_2640, retro_hsap_2668, retro_hsap_2718, retro_hsap_2857, retro_hsap_291, retro_hsap_2917, retro_hsap_2944, retro_hsap_3049, retro_hsap_3055, retro_hsap_332, retro_hsap_3343, retro_hsap_3393, retro_hsap_3432, retro_hsap_3439, retro_hsap_3449, retro_hsap_3549, retro_hsap_3745, retro_hsap_3756, retro_hsap_3757, retro_hsap_394, retro_hsap_3979, retro_hsap_4011, retro_hsap_4084, retro_hsap_414, retro_hsap_4218, retro_hsap_4282, retro_hsap_437, retro_hsap_4747, retro_hsap_482, retro_hsap_4883, retro_hsap_668, retro_hsap_84, retro_hsap_845, retro_hsap_924,
Gorilla gorilla	ENSGGOG00000003040	ortholog_one2one	6 retrogenes	retro_ggor_1006, retro_ggor_1010, retro_ggor_1221, retro_ggor_1738, retro_ggor_2041, retro_ggor_950,
Mustela putorius furo	ENSMPUG00000004620	possible_ortholog	1 retrogene	retro_mputfur_34,
Mustela putorius furo	ENSMPUG00000005735	possible_ortholog	2 retrogenes	retro_mputfur_1378, retro_mputfur_653,
Mus musculus	ENSMUSG00000046434	ortholog_one2one	3 retrogenes	retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Nomascus leucogenys	ENSNLEG00000017659	ortholog_one2one	34 retrogenes	retro_nleu_1011, retro_nleu_1090, retro_nleu_1257, retro_nleu_130, retro_nleu_132, retro_nleu_1497, retro_nleu_1630, retro_nleu_1648, retro_nleu_166, retro_nleu_167, retro_nleu_1695, retro_nleu_1739, retro_nleu_1774, retro_nleu_1802, retro_nleu_1875, retro_nleu_190, retro_nleu_2040, retro_nleu_2222, retro_nleu_2304, retro_nleu_2324, retro_nleu_2378, retro_nleu_2690, retro_nleu_2742, retro_nleu_2852, retro_nleu_32, retro_nleu_366, retro_nleu_458, retro_nleu_587, retro_nleu_601, retro_nleu_645, retro_nleu_648, retro_nleu_708, retro_nleu_825, retro_nleu_987,
Oryctolagus cuniculus	ENSOCUG00000013350	possible_ortholog	1 retrogene	retro_ocun_1675,
Oreochromis niloticus	ENSONIG00000012248	ortholog_one2many	1 retrogene	retro_onil_38,
Ochotona princeps	ENSOPRG00000006107	ortholog_one2one	10 retrogenes	retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Pteropus vampyrus	ENSPVAG00000000322	ortholog_one2one	9 retrogenes	retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Rattus norvegicus	ENSRNOG00000036839	ortholog_one2one	17 retrogenes	retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Tupaia belangeri	ENSTBEG00000008238	ortholog_one2one	30 retrogenes	retro_tbel_1219, retro_tbel_156, retro_tbel_162, retro_tbel_1643, retro_tbel_1830, retro_tbel_1967, retro_tbel_2192, retro_tbel_2195, retro_tbel_2211, retro_tbel_2330, retro_tbel_261, retro_tbel_2666, retro_tbel_2673, retro_tbel_2703, retro_tbel_276, retro_tbel_2774, retro_tbel_2787, retro_tbel_2970, retro_tbel_3473, retro_tbel_3976, retro_tbel_3995, retro_tbel_4266, retro_tbel_4271, retro_tbel_453, retro_tbel_4653, retro_tbel_4729, retro_tbel_692, retro_tbel_70, retro_tbel_79, retro_tbel_839,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_382	83.89	78.82	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_474	81.62	86.06	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_712	77.12	85.25	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_781	73.75	68.90	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_844	74.83	75.87	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_888	86.00	66.76	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_1574	71.96	78.82	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_1742	69.06	70.24	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_1867	80.68	54.16	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000010150 retrocopies

Parental gene:	HNRNPA1, ENSFCAG00000010150
Aliases:	None
Description:	heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031]
Organism:	*Cat (Felis catus)*
Coordinates:	B4:83024715..83028245(+)

Parental gene:

HNRNPA1, ENSFCAG00000010150