Parental gene:

HNRNPA1, ENSNLEG00000017659

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397261.1:58208927..58213491(-)


>ENSNLEG00000017659
ATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACCGA
TGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGGGGCTTTGGGTTTGTCACATACGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCGAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGAT
ATTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTGA
TTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGAT
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGAAAAGCCCTGTCAAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGTGGTGGTCGTGGCGGTGGTTTTGGTGGGAATG
ACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACACTGGAGGAAGCAGAGGCTA
TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAAT
CAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATA
CTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 ortholog_one2one 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Cavia porcellus ENSCPOG00000020972 possible_ortholog 1 retrogene
retro_cpor_1078,
Equus caballus ENSECAG00000008676 ortholog_one2one 1 retrogene
retro_ecab_74,
Felis catus ENSFCAG00000010150 ortholog_one2one 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Homo sapiens ENSG00000135486 ortholog_one2one 57 retrogenes
retro_hsap_1021, retro_hsap_1042, retro_hsap_1082, retro_hsap_1240, retro_hsap_1276, retro_hsap_1282, retro_hsap_1287, retro_hsap_1481, retro_hsap_158, retro_hsap_1584, retro_hsap_1613, retro_hsap_1638, retro_hsap_1711, retro_hsap_1899, retro_hsap_1933, retro_hsap_2002, retro_hsap_2029, retro_hsap_2091, retro_hsap_2096, retro_hsap_2197, retro_hsap_2347, retro_hsap_2379, retro_hsap_2636, retro_hsap_2640, retro_hsap_2668, retro_hsap_2718, retro_hsap_2857, retro_hsap_291, retro_hsap_2917, retro_hsap_2944, retro_hsap_3049, retro_hsap_3055, retro_hsap_332, retro_hsap_3343, retro_hsap_3393, retro_hsap_3432, retro_hsap_3439, retro_hsap_3449, retro_hsap_3549, retro_hsap_3745, retro_hsap_3756, retro_hsap_3757, retro_hsap_394, retro_hsap_3979, retro_hsap_4011, retro_hsap_4084, retro_hsap_414, retro_hsap_4218, retro_hsap_4282, retro_hsap_437, retro_hsap_4747, retro_hsap_482, retro_hsap_4883, retro_hsap_668, retro_hsap_84, retro_hsap_845, retro_hsap_924,
Gorilla gorilla ENSGGOG00000003040 ortholog_one2one 6 retrogenes
retro_ggor_1006, retro_ggor_1010, retro_ggor_1221, retro_ggor_1738, retro_ggor_2041, retro_ggor_950,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Mus musculus ENSMUSG00000046434 ortholog_one2one 3 retrogenes
retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Nomascus leucogenys ENSNLEG00000008636 other_paralog 1 retrogene
retro_nleu_673,
Nomascus leucogenys ENSNLEG00000015775 other_paralog 1 retrogene
retro_nleu_1611,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Ochotona princeps ENSOPRG00000006107 ortholog_one2one 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Pteropus vampyrus ENSPVAG00000000322 ortholog_one2one 9 retrogenes
retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Rattus norvegicus ENSRNOG00000036839 ortholog_one2one 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Tupaia belangeri ENSTBEG00000008238 ortholog_one2one 30 retrogenes
retro_tbel_1219, retro_tbel_156, retro_tbel_162, retro_tbel_1643, retro_tbel_1830, retro_tbel_1967, retro_tbel_2192, retro_tbel_2195, retro_tbel_2211, retro_tbel_2330, retro_tbel_261, retro_tbel_2666, retro_tbel_2673, retro_tbel_2703, retro_tbel_276, retro_tbel_2774, retro_tbel_2787, retro_tbel_2970, retro_tbel_3473, retro_tbel_3976, retro_tbel_3995, retro_tbel_4266, retro_tbel_4271, retro_tbel_453, retro_tbel_4653, retro_tbel_4729, retro_tbel_692, retro_tbel_70, retro_tbel_79, retro_tbel_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_32 52.96 79.03
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2. retro_nleu_130 73.91 73.66
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3. retro_nleu_132 75.34 58.87
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4. retro_nleu_166 74.06 86.02
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5. retro_nleu_167 84.56 69.09
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6. retro_nleu_190 71.43 76.08
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7. retro_nleu_366 87.45 68.55
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8. retro_nleu_458 81.39 62.10
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9. retro_nleu_587 77.83 54.03
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10. retro_nleu_601 86.67 64.25
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11. retro_nleu_645 87.14 64.78
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12. retro_nleu_648 87.39 59.41
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13. retro_nleu_708 64.60 59.95
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14. retro_nleu_825 75.40 66.40
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15. retro_nleu_987 62.20 76.34
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16. retro_nleu_1011 81.40 64.52
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17. retro_nleu_1090 90.62 68.55
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18. retro_nleu_1257 76.52 69.62
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19. retro_nleu_1497 82.70 63.17
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20. retro_nleu_1630 78.22 59.68
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21. retro_nleu_1648 74.84 86.02
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22. retro_nleu_1695 86.72 68.55
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23. retro_nleu_1739 65.25 74.19
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24. retro_nleu_1774 82.75 68.55
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25. retro_nleu_1802 72.83 73.66
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26. retro_nleu_1875 78.77 56.99
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27. retro_nleu_2040 85.55 68.55
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28. retro_nleu_2222 77.72 54.30
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29. retro_nleu_2304 84.98 67.47
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30. retro_nleu_2324 80.47 68.55
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31. retro_nleu_2378 81.47 69.09
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32. retro_nleu_2690 83.33 51.08
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33. retro_nleu_2742 84.80 66.67
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34. retro_nleu_2852 80.29 55.11
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Download FASTA sequences of all ENSNLEG00000017659 retrocopies