RetrogeneDB ID: | retro_oana_9 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig13:5939253..5939703(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOANG00000015465 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM1 | ||
Ensembl ID: | ENSOANG00000015365 | ||
Aliases: | None | ||
Description: | calmodulin 1 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1442] |
Percent Identity: | 74.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL |
MRSLGQNPTEAEL...I..VD.DGNGT.DFPEFL..MA..MKD...E..IREAFR.FDKDGNGYISAAEL | |
Retrocopy | MRSLGQNPTEAELKGIIDQVDTDGNGTVDFPEFLGLMAQMMKDPEVEDGIREAFRMFDKDGNGYISAAEL |
Parental | RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK |
R.V...LGEKLTDEEVDEMIR.AD.DGDG.VNYEEFV.....K | |
Retrocopy | RQVLATLGEKLTDEEVDEMIRGADTDGDGKVNYEEFVRVLKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 11 .30 RPM | 1807 .30 RPM |
SRP007412_cerebellum | 13 .25 RPM | 620 .25 RPM |
SRP007412_heart | 2 .30 RPM | 112 .20 RPM |
SRP007412_kidney | 0 .30 RPM | 1076 .90 RPM |
SRP007412_liver | 0 .45 RPM | 98 .63 RPM |
SRP007412_testis | 0 .47 RPM | 245 .74 RPM |