Parental gene:

CALM1, ENSCJAG00000017740

Aliases:None
Description:calmodulin 1 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1442]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:115957009..115968558(+)


>ENSCJAG00000017740
ATGGCTGATCAGCTGACCGAAGAACAGATTGCTGAATTCAAAGAAGCTTTCTCCCTGTTCGATAAAGATGGTGATGGCAC
CATCACAACAAAGGAACTTGGAACTGTCATGAGGTCACTGGGTCAGAACCCAACAGAAGCTGAGTTGCAGGATATGATCA
ACGAAGTGGATGCTGATGGTAATGGCACCATTGACTTCCCCGAATTTTTGACTATGATGGCTAGAAAAATGAAAGATACA
GATAGTGAAGAAGAAATCCGTGAGGCATTCCGAGTCTTTGACAAGGATGGCAATGGTTACATCAGTGCAGCAGAACTACG
TCACGTCATGACAAACTTAGGAGAAAAACTAACAGATGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGAG
ATGGACAAGTCAACTATGAAGAATTCGTACAGATGATGACTGCAAAATGA

Library Parental gene expression (RPM)
SRP051959_spleen 345 .40 RPM
SRP051959_skeletal_muscle 144 .90 RPM
SRP051959_lymph_node 223 .30 RPM
SRP051959_lung 250 .50 RPM
SRP051959_liver 102 .93 RPM
SRP051959_kidney 169 .17 RPM
SRP051959_heart 218 .83 RPM
SRP051959_colon 248 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000001801 ortholog_one2many 4 retrogenes
retro_amel_1215, retro_amel_1714, retro_amel_265, retro_amel_811,
Callithrix jacchus ENSCJAG00000000638 within_species_paralog 4 retrogenes
retro_cjac_1039, retro_cjac_1401, retro_cjac_2859, retro_cjac_4097,
Dasypus novemcinctus ENSDNOG00000004645 ortholog_one2one 9 retrogenes
retro_dnov_1093, retro_dnov_18, retro_dnov_1864, retro_dnov_1972, retro_dnov_2229, retro_dnov_241, retro_dnov_2522, retro_dnov_2674, retro_dnov_865,
Dipodomys ordii ENSDORG00000003200 ortholog_one2one 6 retrogenes
retro_dord_108, retro_dord_113, retro_dord_201, retro_dord_212, retro_dord_29, retro_dord_5,
Equus caballus ENSECAG00000009162 ortholog_one2one 1 retrogene
retro_ecab_279,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Homo sapiens ENSG00000198668 ortholog_one2one 2 retrogenes
retro_hsap_1290, retro_hsap_3847,
Gallus gallus ENSGALG00000026445 ortholog_one2one 1 retrogene
retro_ggal_9,
Gorilla gorilla ENSGGOG00000028540 ortholog_one2one 1 retrogene
retro_ggor_2592,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Latimeria chalumnae ENSLACG00000005059 possible_ortholog 1 retrogene
retro_lcha_53,
Loxodonta africana ENSLAFG00000002905 ortholog_one2one 1 retrogene
retro_lafr_1165,
Meleagris gallopavo ENSMGAG00000013055 ortholog_one2one 1 retrogene
retro_mgal_13,
Microcebus murinus ENSMICG00000004980 ortholog_one2one 3 retrogenes
retro_mmur_314, retro_mmur_35, retro_mmur_45,
Monodelphis domestica ENSMODG00000002696 ortholog_one2one 4 retrogenes
retro_mdom_137, retro_mdom_178, retro_mdom_185, retro_mdom_208,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000008087 ortholog_one2one 1 retrogene
retro_mputfur_523,
Mus musculus ENSMUSG00000001175 ortholog_one2one 4 retrogenes
retro_mmus_1519, retro_mmus_2859, retro_mmus_2871, retro_mmus_50,
Nomascus leucogenys ENSNLEG00000017040 ortholog_one2one 3 retrogenes
retro_nleu_2039, retro_nleu_2093, retro_nleu_2648,
Ornithorhynchus anatinus ENSOANG00000015365 ortholog_one2one 1 retrogene
retro_oana_9,
Oryctolagus cuniculus ENSOCUG00000011659 ortholog_one2one 1 retrogene
retro_ocun_626,
Otolemur garnettii ENSOGAG00000028089 ortholog_one2one 1 retrogene
retro_ogar_1727,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000006060 ortholog_one2one 1 retrogene
retro_pabe_1045,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Pan troglodytes ENSPTRG00000006626 ortholog_one2one 1 retrogene
retro_ptro_3043,
Pteropus vampyrus ENSPVAG00000010028 ortholog_one2one 1 retrogene
retro_pvam_1274,
Rattus norvegicus ENSRNOG00000004060 ortholog_one2many 3 retrogenes
retro_rnor_318, retro_rnor_389, retro_rnor_392,
Sus scrofa ENSSSCG00000025768 ortholog_one2one 3 retrogenes
retro_sscr_26, retro_sscr_390, retro_sscr_692,
Tursiops truncatus ENSTTRG00000013584 ortholog_one2one 2 retrogenes
retro_ttru_1637, retro_ttru_1699,
Vicugna pacos ENSVPAG00000004563 ortholog_one2one 1 retrogene
retro_vpac_472,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_693 92.62 100.00
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2. retro_cjac_1418 91.49 93.96
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3. retro_cjac_2564 79.58 95.30
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Download FASTA sequences of all ENSCJAG00000017740 retrocopies