RetrogeneDB ID: | retro_dnov_18 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_18481:48886..49336(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000005615 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM1 | ||
Ensembl ID: | ENSDNOG00000004645 | ||
Aliases: | None | ||
Description: | calmodulin 1 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1442] |
Percent Identity: | 78.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MA.QLT.EQ.AEFKEAFSLFDKDGDGTIT..ELGTVMRSLGQNPTEAEL.DM...VDADG.GT..FPEFL | |
Retrocopy | MAEQLTQEQLAEFKEAFSLFDKDGDGTITARELGTVMRSLGQNPTEAELRDMVRQVDADGSGTVAFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
..MA.KM.D.D.EE.IR.AFRVFDKDGNG..SAAELRHVMT.LGEKL..EEVDEMI..AD.DGDGQVNYE | |
Retrocopy | GLMAKKMRDADGEEDIRQAFRVFDKDGNGFVSAAELRHVMTRLGEKLSEEEVDEMIQAADADGDGQVNYE |
Parental | EFVQMMTAK |
EFV.M...K | |
Retrocopy | EFVRMLVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 302 .01 RPM |
SRP012922_cerebellum | 0 .41 RPM | 385 .74 RPM |
SRP012922_heart | 0 .00 RPM | 135 .74 RPM |
SRP012922_kidney | 2 .74 RPM | 133 .06 RPM |
SRP012922_liver | 0 .00 RPM | 89 .94 RPM |
SRP012922_lung | 0 .31 RPM | 320 .57 RPM |
SRP012922_quadricep_muscle | 1 .04 RPM | 209 .78 RPM |
SRP012922_spleen | 0 .34 RPM | 251 .70 RPM |