Parental gene:

CALM1, ENSSSCG00000025768

Aliases:None
Description:Sus scrofa calmodulin 1 (CALM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001244210]
Organism:Pig (Sus scrofa)
Coordinates:7:118728007..118738940(+)


>ENSSSCG00000025768
ATGGCTGATCAGCTGACCGAAGAACAGATTGCTGAATTCAAGGAAGCTTTCTCCCTATTTGACAAAGACGGCGATGGCAC
CATCACAACAAAGGAACTTGGAACTGTCATGAGGTCATTGGGTCAGAACCCGACAGAAGCTGAGTTGCAGGATATGATCA
ATGAGGTGGACGCTGATGGTAATGGCACCATTGACTTCCCAGAATTTTTGACTATGATGGCTAGGAAAATGAAAGACACA
GACAGCGAAGAAGAAATCCGCGAGGCATTCCGAGTCTTTGACAAGGATGGCAATGGCTACATCAGTGCTGCAGAACTACG
TCACGTCATGACAAACTTAGGAGAAAAACTAACAGACGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGAG
ATGGACAAGTCAACTACGAAGAATTCGTACAGATGATGACTGCAAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 171 .22 RPM
SRP014902_testis 72 .42 RPM
SRP018288_heart 173 .43 RPM
SRP018288_kidney 139 .39 RPM
SRP018288_liver 56 .93 RPM
SRP018288_lung 192 .45 RPM
SRP018856_adipose 205 .37 RPM
SRP035408_brain 1287 .25 RPM
SRP035408_liver 60 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000001801 ortholog_one2many 4 retrogenes
retro_amel_1215, retro_amel_1714, retro_amel_265, retro_amel_811,
Callithrix jacchus ENSCJAG00000017740 ortholog_one2one 3 retrogenes
retro_cjac_1418, retro_cjac_2564, retro_cjac_693,
Dasypus novemcinctus ENSDNOG00000004645 ortholog_one2one 9 retrogenes
retro_dnov_1093, retro_dnov_18, retro_dnov_1864, retro_dnov_1972, retro_dnov_2229, retro_dnov_241, retro_dnov_2522, retro_dnov_2674, retro_dnov_865,
Dipodomys ordii ENSDORG00000003200 ortholog_one2one 6 retrogenes
retro_dord_108, retro_dord_113, retro_dord_201, retro_dord_212, retro_dord_29, retro_dord_5,
Equus caballus ENSECAG00000009162 ortholog_one2one 1 retrogene
retro_ecab_279,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Homo sapiens ENSG00000198668 ortholog_one2one 2 retrogenes
retro_hsap_1290, retro_hsap_3847,
Gallus gallus ENSGALG00000026445 ortholog_one2one 1 retrogene
retro_ggal_9,
Gorilla gorilla ENSGGOG00000028540 ortholog_one2one 1 retrogene
retro_ggor_2592,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Latimeria chalumnae ENSLACG00000005059 possible_ortholog 1 retrogene
retro_lcha_53,
Loxodonta africana ENSLAFG00000002905 ortholog_one2one 1 retrogene
retro_lafr_1165,
Meleagris gallopavo ENSMGAG00000013055 ortholog_one2one 1 retrogene
retro_mgal_13,
Microcebus murinus ENSMICG00000004980 ortholog_one2one 3 retrogenes
retro_mmur_314, retro_mmur_35, retro_mmur_45,
Monodelphis domestica ENSMODG00000002696 ortholog_one2one 4 retrogenes
retro_mdom_137, retro_mdom_178, retro_mdom_185, retro_mdom_208,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000008087 ortholog_one2one 1 retrogene
retro_mputfur_523,
Mus musculus ENSMUSG00000001175 ortholog_one2one 4 retrogenes
retro_mmus_1519, retro_mmus_2859, retro_mmus_2871, retro_mmus_50,
Nomascus leucogenys ENSNLEG00000017040 ortholog_one2one 3 retrogenes
retro_nleu_2039, retro_nleu_2093, retro_nleu_2648,
Ornithorhynchus anatinus ENSOANG00000015365 ortholog_one2one 1 retrogene
retro_oana_9,
Oryctolagus cuniculus ENSOCUG00000011659 ortholog_one2one 1 retrogene
retro_ocun_626,
Otolemur garnettii ENSOGAG00000028089 ortholog_one2one 1 retrogene
retro_ogar_1727,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000006060 ortholog_one2one 1 retrogene
retro_pabe_1045,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Pan troglodytes ENSPTRG00000006626 ortholog_one2one 1 retrogene
retro_ptro_3043,
Rattus norvegicus ENSRNOG00000004060 ortholog_one2many 3 retrogenes
retro_rnor_318, retro_rnor_389, retro_rnor_392,
Sus scrofa ENSSSCG00000008433 within_species_paralog 1 retrogene
retro_sscr_228,
Tursiops truncatus ENSTTRG00000013584 ortholog_one2one 2 retrogenes
retro_ttru_1637, retro_ttru_1699,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_26 86.58 100.00
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2. retro_sscr_390 86.58 100.00
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3. retro_sscr_692 53.27 68.46
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Download FASTA sequences of all ENSSSCG00000025768 retrocopies