RetrogeneDB ID: | retro_opri_86 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_2140:486001..486366(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSOPRG00000015478 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 83.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MADQLTEEQIAEF-KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF |
MADQLTEEQIAEF.K.AFS...KDGDGTITTKE.GT.MRSL.QNPTEAELQDM.N.VDAD.NGTID.P.F | |
Retrocopy | MADQLTEEQIAEF>KKAFS---KDGDGTITTKESGTGMRSLRQNPTEAELQDMTNDVDADANGTIDSPGF |
Parental | LTMMAR-KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE |
LTMMAR.K.KDTDSE.EI.EA..VF.K.GNGYISA.EL.HVMT.LGEKL.DEEVD. | |
Retrocopy | LTMMAR>KIKDTDSEKEIGEAVCVFEKAGNGYISAVELCHVMTRLGEKLADEEVDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |