RetrogeneDB ID: | retro_itri_778 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393321.1:5645624..5646074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020404 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSSTOG00000021814 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 87.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
.ADQLT..QIAEFKEAF.LFDKDG.GTITTKEL.TVM.SLGQNPTEAELQDMINEVDADG.GTIDFPEFL | |
Retrocopy | VADQLTKVQIAEFKEAFPLFDKDGNGTITTKELATVMWSLGQNPTEAELQDMINEVDADGIGTIDFPEFL |
Parental | -TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY |
.T.MARKMKD.DSEEEIREA.RVFDKDGNG.I.AAELRHVMTNLGEKLTDEEVDEM..E.DIDGD.QVNY | |
Retrocopy | LTIMARKMKDADSEEEIREALRVFDKDGNGCINAAELRHVMTNLGEKLTDEEVDEMFGEVDIDGDCQVNY |
Parental | EEFVQMMTAK |
EEFVQMMT.K | |
Retrocopy | EEFVQMMTTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |