RetrogeneDB ID: | retro_pabe_3396 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:28933083..28933329(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSPPYG00000025860 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 70.73 % |
Parental protein coverage: | 69.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRH |
YKNI.LGFKTPKEAIEGTY.DKKCPFTGNVSI...ILSG...KMKM.RT.VI..DYL.Y..KY....K.H | |
Retrocopy | YKNISLGFKTPKEAIEGTYVDKKCPFTGNVSI*RQILSGEGSKMKMERTTVIH*DYLCYMYKYSCSKKCH |
Parental | KNMSVHLSPCFR |
KN.S..LS.CFR | |
Retrocopy | KNVSISLSSCFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 131 .21 RPM |
SRP007412_heart | 0 .00 RPM | 163 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 398 .29 RPM |
SRP007412_liver | 0 .00 RPM | 259 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4242 |