RetrogeneDB ID: | retro_rnor_538 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:246620264..246620646(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps11 | ||
Ensembl ID: | ENSRNOG00000020595 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S11 [Source:UniProtKB/Swiss-Prot;Acc:P62282] |
Percent Identity: | 80.77 % |
Parental protein coverage: | 81.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC-PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRK |
K..L......IGLGF.TPKEA.EGTYIDKK..PFTGNVSI.G.IL.GVVTKM..Q.TIVI.RDYLHY..K | |
Retrocopy | KNSLGTTKTSIGLGFNTPKEAMEGTYIDKK*>PFTGNVSIPGWILPGVVTKM--QKTIVICRDYLHYNQK |
Parental | YNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF |
YNRFEKRHKNMSVHLS.CFRDVQ.GDIVTVGECRPLSKTV.FNVLKVTKAAGTKKQFQ.F | |
Retrocopy | YNRFEKRHKNMSVHLSSCFRDVQMGDIVTVGECRPLSKTVGFNVLKVTKAAGTKKQFQEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 111 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .47 RPM |
SRP017611_liver | 0 .00 RPM | 105 .50 RPM |