RetrogeneDB - Parental gene ENSRNOG00000020595 details

Parental gene:	Rps11, ENSRNOG00000020595
Aliases:	None
Description:	40S ribosomal protein S11 [Source:UniProtKB/Swiss-Prot;Acc:P62282]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	1:102182158..102184324(-)

                            
>ENSRNOG00000020595
ATGGCGGACATTCAGACGGAGCGTGCTTACCAAAAGCAGCCTACAATCTTTCAAAACAAGAAACGTGTTTTGCTGGGAGA

AACTGGCAAGGAAAAACTCCCTCGGTACTACAAAAACATCGGTCTAGGCTTCAAGACGCCCAAGGAGGCCATCGAGGGCA

CCTACATAGACAAGAAATGCCCCTTCACTGGTAATGTCTCCATCCGAGGACGGATCCTGTCTGGTGTTGTGACGAAGATG

AAGATGCAGAGGACCATTGTCATCCGCCGGGACTATCTCCATTATATCCGAAAGTACAACCGCTTTGAGAAGCGTCACAA

GAACATGTCTGTGCACCTGTCCCCCTGTTTCAGGGACGTCCAGATTGGCGACATTGTCACTGTTGGAGAGTGCAGGCCTC

TGAGCAAGACTGTTCGATTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTCCAGAAGTTCTGA

Library	Parental gene expression (RPM)
SRP017611_brain	111 .66 RPM
SRP017611_kidney	155 .47 RPM
SRP017611_liver	105 .50 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014020	ortholog_one2one	13 retrogenes	retro_amel_1038, retro_amel_1071, retro_amel_1398, retro_amel_1406, retro_amel_1475, retro_amel_246, retro_amel_262, retro_amel_317, retro_amel_64, retro_amel_757, retro_amel_759, retro_amel_764, retro_amel_859,
Bos taurus	ENSBTAG00000013924	ortholog_one2one	5 retrogenes	retro_btau_1282, retro_btau_1369, retro_btau_1499, retro_btau_1529, retro_btau_888,
Canis familiaris	ENSCAFG00000003631	possible_ortholog	9 retrogenes	retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Callithrix jacchus	ENSCJAG00000000069	ortholog_one2one	1 retrogene	retro_cjac_340,
Cavia porcellus	ENSCPOG00000015145	ortholog_one2one	1 retrogene	retro_cpor_534,
Danio rerio	ENSDARG00000053058	ortholog_many2many	1 retrogene	retro_drer_15,
Dasypus novemcinctus	ENSDNOG00000016107	possible_ortholog	9 retrogenes	retro_dnov_1055, retro_dnov_1102, retro_dnov_1629, retro_dnov_1729, retro_dnov_188, retro_dnov_2520, retro_dnov_586, retro_dnov_68, retro_dnov_754,
Dipodomys ordii	ENSDORG00000012195	possible_ortholog	1 retrogene	retro_dord_635,
Equus caballus	ENSECAG00000000370	ortholog_one2many	1 retrogene	retro_ecab_868,
Erinaceus europaeus	ENSEEUG00000003392	ortholog_one2one	1 retrogene	retro_eeur_75,
Felis catus	ENSFCAG00000009196	possible_ortholog	13 retrogenes	retro_fcat_1362, retro_fcat_1491, retro_fcat_1535, retro_fcat_1564, retro_fcat_1719, retro_fcat_1945, retro_fcat_197, retro_fcat_1991, retro_fcat_273, retro_fcat_507, retro_fcat_792, retro_fcat_854, retro_fcat_995,
Homo sapiens	ENSG00000142534	ortholog_one2one	6 retrogenes	retro_hsap_1017, retro_hsap_1068, retro_hsap_230, retro_hsap_2449, retro_hsap_4242, retro_hsap_4674,
Gorilla gorilla	ENSGGOG00000002936	possible_ortholog	6 retrogenes	retro_ggor_1525, retro_ggor_2843, retro_ggor_2900, retro_ggor_292, retro_ggor_805, retro_ggor_842,
Loxodonta africana	ENSLAFG00000016217	ortholog_one2one	2 retrogenes	retro_lafr_622, retro_lafr_658,
Macropus eugenii	ENSMEUG00000008649	possible_ortholog	2 retrogenes	retro_meug_1176, retro_meug_1640,
Microcebus murinus	ENSMICG00000002542	possible_ortholog	8 retrogenes	retro_mmur_1278, retro_mmur_1317, retro_mmur_186, retro_mmur_295, retro_mmur_430, retro_mmur_452, retro_mmur_812, retro_mmur_820,
Myotis lucifugus	ENSMLUG00000030475	possible_ortholog	1 retrogene	retro_mluc_539,
Macaca mulatta	ENSMMUG00000007549	possible_ortholog	6 retrogenes	retro_mmul_1147, retro_mmul_1856, retro_mmul_2464, retro_mmul_413, retro_mmul_634, retro_mmul_813,
Monodelphis domestica	ENSMODG00000013434	ortholog_one2many	7 retrogenes	retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Mustela putorius furo	ENSMPUG00000002599	ortholog_one2one	10 retrogenes	retro_mputfur_1402, retro_mputfur_1507, retro_mputfur_200, retro_mputfur_306, retro_mputfur_345, retro_mputfur_485, retro_mputfur_491, retro_mputfur_626, retro_mputfur_781, retro_mputfur_897,
Mus musculus	ENSMUSG00000003429	possible_ortholog	16 retrogenes	retro_mmus_1738, retro_mmus_2230, retro_mmus_2255, retro_mmus_2322, retro_mmus_2486, retro_mmus_2854, retro_mmus_3048, retro_mmus_3051, retro_mmus_3060, retro_mmus_3342, retro_mmus_398, retro_mmus_404, retro_mmus_714, retro_mmus_754, retro_mmus_842, retro_mmus_860,
Otolemur garnettii	ENSOGAG00000004627	possible_ortholog	7 retrogenes	retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Procavia capensis	ENSPCAG00000004146	ortholog_one2one	2 retrogenes	retro_pcap_333, retro_pcap_54,
Pongo abelii	ENSPPYG00000025860	ortholog_one2one	5 retrogenes	retro_pabe_1800, retro_pabe_3396, retro_pabe_3631, retro_pabe_855, retro_pabe_889,
Pelodiscus sinensis	ENSPSIG00000011089	possible_ortholog	1 retrogene	retro_psin_35,
Pan troglodytes	ENSPTRG00000011299	possible_ortholog	1 retrogene	retro_ptro_88,
Sorex araneus	ENSSARG00000003236	ortholog_one2one	2 retrogenes	retro_sara_11, retro_sara_469,
Sarcophilus harrisii	ENSSHAG00000004991	possible_ortholog	1 retrogene	retro_shar_649,
Sus scrofa	ENSSSCG00000003165	possible_ortholog	2 retrogenes	retro_sscr_432, retro_sscr_887,
Ictidomys tridecemlineatus	ENSSTOG00000023443	possible_ortholog	2 retrogenes	retro_itri_1033, retro_itri_805,
Tupaia belangeri	ENSTBEG00000016677	possible_ortholog	16 retrogenes	retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_385	79.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_394	77.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_538	80.77	81.65	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_737	52.34	81.01	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_835	74.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_989	85.56	56.96	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1132	80.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1159	84.00	78.48	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1261	88.98	80.38	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_1299	88.98	80.38	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_1363	75.26	61.39	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_1414	72.96	99.37	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_1435	78.38	92.41	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_1451	92.91	89.24	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_rnor_1635	50.48	64.56	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_rnor_1790	71.29	63.29	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_rnor_2000	67.68	62.03	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_rnor_2647	85.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000020595 retrocopies

Parental gene:

Rps11, ENSRNOG00000020595