RetrogeneDB ID: | retro_pvam_1139 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_31912:423..861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSPVAG00000007394 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474] |
Percent Identity: | 69.86 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT |
MALKRI.KE..DL.RD.PA.CSAGPVG.D.F.WQATI.GP.DS.YQ.G.FFL...FP..YP.KPPKI.FT | |
Retrocopy | MALKRIYKEFLDLSRDLPAQCSAGPVGEDIFNWQATIKGPNDSPYQDGIFFLKIQFPFNYPLKPPKITFT |
Parental | TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE |
T.IYHPNI..NG.ICLDILRSQWSPALT.S..LLSI...LCDPNP.D.LVP.IA.IY.....KY.R.AR. | |
Retrocopy | TRIYHPNIDRNGNICLDILRSQWSPALTISQLLLSIYTMLCDPNPEDALVPKIAKIYIKNRQKYDRRARA |
Parental | WTQKYA |
WT.KYA | |
Retrocopy | WTHKYA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |