RetrogeneDB ID: | retro_btau_752 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:6754654..6754941(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSBTAG00000020796 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 D1 [Source:UniProtKB/Swiss-Prot;Acc:Q2TA10] |
Percent Identity: | 87.63 % |
Parental protein coverage: | 65.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSL-LCDPNPDDPLV |
.TVHFPTDYPFKPPK.AFTTK.YHPNINSNGSICL..LRSQ.SPALTVSKVLLSI.SL..CDPNPDDPLV | |
Retrocopy | ITVHFPTDYPFKPPKAAFTTKTYHPNINSNGSICLYALRSQQSPALTVSKVLLSIRSL<VCDPNPDDPLV |
Parental | PDIAQIYKSDKEKYNRHAREWTQKYAM |
P..AQIYKSDKEKYNRHAREWTQKYA. | |
Retrocopy | PGMAQIYKSDKEKYNRHAREWTQKYAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 2 .88 RPM | 13 .41 RPM |
ERP005899_muscle | 0 .00 RPM | 3 .22 RPM |
SRP017611_brain | 0 .00 RPM | 7 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .96 RPM |
SRP017611_liver | 0 .60 RPM | 2 .49 RPM |
SRP030211_testis | 0 .00 RPM | 3 .44 RPM |