RetrogeneDB ID:

retro_chof_2089

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_48239:4047..4400(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000001213
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_2089
ATGTTTCACTGGCAAGCCACAATTACGATACCTAATAACAGCCTATATCAAGGCGGTGTATTGTTTTTGACAATTCATTT
TCCTACAGACTACCCCTTCAAACCACCTAAGGTTTCATTTACAACAAGAATTTATCATCCAAATATTAACAATAATGGCA
GCATTTGTCTCATTATCCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTCAAGTTCTTTTATCCATTTGTTCACTG
CTATGTGATCTGAACCGAGATGACCCCCTGTGCCAGAGATTGTACGGATCTATAAAATAGACAGAGATAAGTACAACAGA
GTATCTTGGGAATGGACTCAGAAGTATGCCATG

ORF - retro_chof_2089 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.31 %
Parental protein coverage: 80.27 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTV
.FHWQATI..P..S.YQGGV.FLT.HFPTDYPFKPPK..FTT.IYHPNIN.NGSICL.ILRSQWSPALT.
RetrocopyMFHWQATITIPNNSLYQGGVLFLTIHFPTDYPFKPPKVSFTTRIYHPNINNNGSICLIILRSQWSPALTI
ParentalSKVLLSICSLLCDPNPDDPL-VPDIAQIYKSDKEKYNRHAREWTQKYAM
S.VLLSICSLLCD.N.DDPL.VP.I..IYK.D..KYNR...EWTQKYAM
RetrocopySQVLLSICSLLCDLNRDDPL<VPEIVRIYKIDRDKYNRVSWEWTQKYAM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2089 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 96 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207965 retrocopies
Choloepus hoffmanni ENSCHOG00000001213 21 retrocopies
Choloepus hoffmanni ENSCHOG000000015151 retrocopy
Choloepus hoffmanni ENSCHOG000000046492 retrocopies
Choloepus hoffmanni ENSCHOG000000073253 retrocopies
Choloepus hoffmanni ENSCHOG000000103412 retrocopies
Dasypus novemcinctus ENSDNOG000000138211 retrocopy
Echinops telfairi ENSETEG000000022802 retrocopies
Homo sapiens ENSG000000724012 retrocopies
Macropus eugenii ENSMEUG000000072381 retrocopy
Microcebus murinus ENSMICG000000102531 retrocopy
Myotis lucifugus ENSMLUG0000000571013 retrocopies
Mus musculus ENSMUSG0000001992722 retrocopies
Procavia capensis ENSPCAG000000069981 retrocopy
Pteropus vampyrus ENSPVAG000000073942 retrocopies
Sarcophilus harrisii ENSSHAG000000104811 retrocopy
Tarsius syrichta ENSTSYG000000112293 retrocopies
Tursiops truncatus ENSTTRG000000092448 retrocopies
Vicugna pacos ENSVPAG000000069445 retrocopies



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