Parental gene:

UBE2D1, ENSVPAG00000006944

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474]
Organism:Alpaca (Vicugna pacos)
Coordinates:scaffold_3420:74196..81726(+)


>ENSVPAG00000006944
GAATTAAGTGATCTACAACGCGACCCCCCTGCTCACTGTTCGGCTGGACCTGTGGGCGATGACTTGTTCCACTGGCAAGC
AACTATTATGGGGCCTCCTGATAGCGCATATCAAGGTGGAGTCTTCTTTCTCACTGTACATTTTCCGACAGACTATCCTT
TTAAACCACCAAAGATTGCTTTCACCACAAGAATTTACCACCCAAACATAAACAGCAATGCAAGTATTTGTCTTGATATC
CTGAAGTCACACTGGTCACCAGCTCTGACTGTATCAGTTTTATTGTCCATATGTTCTCTACTTTGTGACCCTAATCCAGA
TGACCCCTTAGTACCAGATATTGCACAAATCTATAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTC
AGAAATATGCAATG

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020796 ortholog_one2one 5 retrogenes
retro_btau_1174, retro_btau_1314, retro_btau_1773, retro_btau_1774, retro_btau_752,
Choloepus hoffmanni ENSCHOG00000001213 ortholog_one2many 21 retrogenes
retro_chof_1091, retro_chof_1169, retro_chof_1465, retro_chof_1675, retro_chof_1731, retro_chof_2071, retro_chof_2089, retro_chof_2098, retro_chof_2101, retro_chof_2190, retro_chof_2266, retro_chof_2364, retro_chof_2481, retro_chof_2485, retro_chof_2514, retro_chof_2637, retro_chof_619, retro_chof_662, retro_chof_683, retro_chof_728, retro_chof_920,
Dasypus novemcinctus ENSDNOG00000013821 ortholog_one2one 1 retrogene
retro_dnov_537,
Echinops telfairi ENSETEG00000002280 ortholog_one2one 2 retrogenes
retro_etel_1363, retro_etel_1600,
Homo sapiens ENSG00000072401 ortholog_one2one 2 retrogenes
retro_hsap_4723, retro_hsap_4725,
Macropus eugenii ENSMEUG00000007238 ortholog_one2many 1 retrogene
retro_meug_1090,
Microcebus murinus ENSMICG00000010253 ortholog_one2one 1 retrogene
retro_mmur_586,
Myotis lucifugus ENSMLUG00000005710 ortholog_one2one 13 retrogenes
retro_mluc_1019, retro_mluc_1597, retro_mluc_1855, retro_mluc_1914, retro_mluc_1971, retro_mluc_2053, retro_mluc_650, retro_mluc_687, retro_mluc_703, retro_mluc_778, retro_mluc_803, retro_mluc_867, retro_mluc_878,
Mus musculus ENSMUSG00000019927 ortholog_one2one 22 retrogenes
retro_mmus_3405, retro_mmus_3406, retro_mmus_3407, retro_mmus_3409, retro_mmus_3430, retro_mmus_3432, retro_mmus_3434, retro_mmus_3435, retro_mmus_3436, retro_mmus_3563, retro_mmus_3564, retro_mmus_3565, retro_mmus_3566, retro_mmus_3567, retro_mmus_3587, retro_mmus_3589, retro_mmus_3590, retro_mmus_3591, retro_mmus_3592, retro_mmus_3593, retro_mmus_3594, retro_mmus_3595,
Procavia capensis ENSPCAG00000006998 ortholog_one2one 1 retrogene
retro_pcap_117,
Pteropus vampyrus ENSPVAG00000007394 ortholog_one2one 2 retrogenes
retro_pvam_1139, retro_pvam_363,
Sarcophilus harrisii ENSSHAG00000010481 ortholog_one2one 1 retrogene
retro_shar_714,
Tarsius syrichta ENSTSYG00000011229 ortholog_one2one 3 retrogenes
retro_tsyr_1217, retro_tsyr_1430, retro_tsyr_501,
Tursiops truncatus ENSTTRG00000009244 ortholog_one2one 8 retrogenes
retro_ttru_137, retro_ttru_1649, retro_ttru_1670, retro_ttru_1793, retro_ttru_1853, retro_ttru_376, retro_ttru_443, retro_ttru_96,
Vicugna pacos ENSVPAG00000007007 other_paralog 3 retrogenes
retro_vpac_108, retro_vpac_315, retro_vpac_425,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_343 68.60 60.87
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2. retro_vpac_513 65.60 89.13
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3. retro_vpac_561 70.21 66.67
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4. retro_vpac_585 68.64 84.06
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5. retro_vpac_587 70.45 62.32
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Download FASTA sequences of all ENSVPAG00000006944 retrocopies