RetrogeneDB ID: | retro_hsap_4725 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:88163337..88163640(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232576 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSG00000072401 | ||
Aliases: | UBE2D1, E2(17)KB1, SFT, UBC4/5, UBCH5, UBCH5A | ||
Description: | ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474] |
Percent Identity: | 62.26 % |
Parental protein coverage: | 70.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQG-GVFFLTVHFPTDYPFKPPKIAF |
M.LK.I.KE.......P.A.CS...VG.D.FHWQATI.GP..S.YQG.GVFFLTVHF..DY.FKPPK.AF | |
Retrocopy | M*LKQINKEFRFFVLGPLAQCS---VGCDSFHWQATIIGPHYSLYQG>GVFFLTVHFHSDYSFKPPKVAF |
Parental | TTKIYHPNI-NSNGSICLDILRSQWSPALTVSKVLL |
.T.IYHPNI..SN..I.L.ILRS.WS.ALT..K..L | |
Retrocopy | ITRIYHPNI<LSNETIGLSILRSLWSSALTFLKLFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 24 .81 RPM |
bodymap2_adrenal | 0 .00 RPM | 28 .49 RPM |
bodymap2_brain | 0 .00 RPM | 26 .18 RPM |
bodymap2_breast | 0 .00 RPM | 37 .47 RPM |
bodymap2_colon | 0 .00 RPM | 30 .40 RPM |
bodymap2_heart | 0 .00 RPM | 69 .54 RPM |
bodymap2_kidney | 0 .00 RPM | 25 .73 RPM |
bodymap2_liver | 0 .00 RPM | 9 .00 RPM |
bodymap2_lung | 0 .00 RPM | 28 .29 RPM |
bodymap2_lymph_node | 0 .00 RPM | 31 .23 RPM |
bodymap2_ovary | 0 .00 RPM | 37 .30 RPM |
bodymap2_prostate | 0 .00 RPM | 35 .14 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 119 .55 RPM |
bodymap2_testis | 0 .00 RPM | 26 .68 RPM |
bodymap2_thyroid | 0 .00 RPM | 34 .52 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 132 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2936 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |