RetrogeneDB ID: | retro_pvam_1265 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_5197:57733..58104(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSPVAG00000011716 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 67.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAPAKKGSEKKKGRSAINEVVTR-EYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLN |
MAPAK.G..KKK..SAIN.VVTR..YTI.IHK.I.GVGFKK..P..LKE..KFA.K.M.TPD...D.R.N | |
Retrocopy | MAPAKNGG-KKKNHSAINKVVTR<KYTIDIHKHINGVGFKKHVP*ELKETWKFATKKMETPDMSTDIRFN |
Parental | K-AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVT-TFKNLQTVNVDEN |
K.A..AKGI.NV.Y.I.V.LSRK.NEDEDSP.KLYTL..Y.P...TFKNLQTVNVDEN | |
Retrocopy | K>AFLAKGIINVSYYIQVQLSRKCNEDEDSPKKLYTLIIYIPIA<TFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Latimeria chalumnae | ENSLACG00000013603 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027873 | 12 retrocopies | |
Macropus eugenii | ENSMEUG00000000963 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000002507 | 21 retrocopies |
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
|
Otolemur garnettii | ENSOGAG00000014494 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025870 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011716 | 17 retrocopies | |
Sus scrofa | ENSSSCG00000008170 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000025180 | 6 retrocopies |