RetrogeneDB ID: | retro_pvam_861 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_13909:25980..26251(+) | ||
Located in intron of: | ENSPVAG00000014980 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSPVAG00000011716 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 57.89 % |
Parental protein coverage: | 74.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | APAKKGSEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEM-GTPDVRIDTRLNK |
AP.KKG..K..G.SA...VVTRE.T....KR.H.VGFKK.APRALKE.R..AMKEM.GT..V...TRL.K | |
Retrocopy | APTKKGGAK--GPSAVTKVVTREHTTSVCKRTHRVGFKKHAPRALKEVRTLAMKEM<GTSGVHPETRLDK |
Parental | AVWAKG-IRNVPYRIRVRLSRKRNE |
A..AKG..RN..YR..VR.....NE | |
Retrocopy | AICAKG<LRNALYRSQVRHGGSPNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Latimeria chalumnae | ENSLACG00000013603 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027873 | 12 retrocopies | |
Macropus eugenii | ENSMEUG00000000963 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000002507 | 21 retrocopies |
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
|
Otolemur garnettii | ENSOGAG00000014494 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025870 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011716 | 17 retrocopies | |
Sus scrofa | ENSSSCG00000008170 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000025180 | 6 retrocopies |