RetrogeneDB ID:

retro_mluc_1301

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429816:2422561..2422900(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000002507
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1301
ATGGCTCCCTTGAAGATAGGTAGTAAGAAGAAGAAGGGCCATTCTGCCATCAACAAGTTAGTGACCAGAGAATGCACCAT
CAACATTCACAAGCACAACCATGAAGTGGGTTTCAAGAAGCATGCCCCTCAGACACTAAAAGAGATCTGAGCATTTGCCA
TAAAGGAGATGGGAACTCTAGACGTGGGCATTGATACCAAGTTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTC
CCATACCATACCCAGGTGCAGTTGTTCAGAAAATGTGCTGAAGATGAAGATTCACCAAACAAGCTCTATACATTAGTCAC
CTATGCATCTGTCACCACT

ORF - retro_mluc_1301 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.45 %
Parental protein coverage: 90.4 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
MAP.K.G..KKKG.SAIN..VTRE.TINIHK..H.VGFKK.AP..LKEI..FA.KEMGT.DV.IDT..NK
RetrocopyMAPLKIGSKKKKGHSAINKLVTRECTINIHKHNHEVGFKKHAPQTLKEI*AFAIKEMGTLDVGIDTKFNK
ParentalAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTT
AVWAKGIRNVPY...V.L.RK..EDEDSPNKLYTLVTY..VTT
RetrocopyAVWAKGIRNVPYHTQVQLFRKCAEDEDSPNKLYTLVTYASVTT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1301 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 33 parental genes, and 537 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000079141 retrocopy
Ailuropoda melanoleuca ENSAMEG000000156472 retrocopies
Bos taurus ENSBTAG000000197019 retrocopies
Cavia porcellus ENSCPOG000000210315 retrocopies
Dipodomys ordii ENSDORG000000157283 retrocopies
Equus caballus ENSECAG0000002407913 retrocopies
Felis catus ENSFCAG0000002643013 retrocopies
Homo sapiens ENSG0000007108245 retrocopies
Gorilla gorilla ENSGGOG0000000643224 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Loxodonta africana ENSLAFG0000002787312 retrocopies
Macropus eugenii ENSMEUG000000009638 retrocopies
Microcebus murinus ENSMICG0000001605915 retrocopies
Myotis lucifugus ENSMLUG00000002507 21 retrocopies
Macaca mulatta ENSMMUG000000098731 retrocopy
Monodelphis domestica ENSMODG000000017045 retrocopies
Mustela putorius furoENSMPUG000000121972 retrocopies
Mus musculus ENSMUSG0000007370241 retrocopies
Nomascus leucogenys ENSNLEG000000144442 retrocopies
Oryctolagus cuniculus ENSOCUG000000023929 retrocopies
Otolemur garnettii ENSOGAG0000001449410 retrocopies
Ochotona princeps ENSOPRG0000000120434 retrocopies
Procavia capensis ENSPCAG0000000478710 retrocopies
Pongo abelii ENSPPYG000000258704 retrocopies
Pteropus vampyrus ENSPVAG0000001171617 retrocopies
Rattus norvegicus ENSRNOG000000135088 retrocopies
Sarcophilus harrisii ENSSHAG000000117063 retrocopies
Sus scrofa ENSSSCG000000081704 retrocopies
Sus scrofa ENSSSCG000000251806 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001090215 retrocopies
Tupaia belangeri ENSTBEG00000016254137 retrocopies
retro_tbel_1092, retro_tbel_1129, retro_tbel_115, retro_tbel_1176, retro_tbel_1195, retro_tbel_1226, retro_tbel_1239, retro_tbel_1249, retro_tbel_1254, retro_tbel_1258, retro_tbel_1266, retro_tbel_131, retro_tbel_1310, retro_tbel_1334, retro_tbel_1356, retro_tbel_1368, retro_tbel_1369, retro_tbel_1381, retro_tbel_1402, retro_tbel_1414, retro_tbel_1423, retro_tbel_1437, retro_tbel_1454, retro_tbel_1574, retro_tbel_1593, retro_tbel_1597, retro_tbel_1605, retro_tbel_1611, retro_tbel_1612, retro_tbel_1632, retro_tbel_1768, retro_tbel_1797, retro_tbel_1802, retro_tbel_184, retro_tbel_189, retro_tbel_1890, retro_tbel_1897, retro_tbel_1915, retro_tbel_2024, retro_tbel_2027, retro_tbel_2050, retro_tbel_2069, retro_tbel_2093, retro_tbel_2140, retro_tbel_2159, retro_tbel_2233, retro_tbel_2341, retro_tbel_2359, retro_tbel_2382, retro_tbel_246, retro_tbel_2520, retro_tbel_2531, retro_tbel_2581, retro_tbel_2582, retro_tbel_2614, retro_tbel_2625, retro_tbel_2668, retro_tbel_2692, retro_tbel_2709, retro_tbel_2741, retro_tbel_2789, retro_tbel_2825, retro_tbel_2847, retro_tbel_2930, retro_tbel_2951, retro_tbel_3015, retro_tbel_3028, retro_tbel_3035, retro_tbel_3061, retro_tbel_3077, retro_tbel_3154, retro_tbel_3174, retro_tbel_3222, retro_tbel_3274, retro_tbel_3282, retro_tbel_3292, retro_tbel_3346, retro_tbel_3365, retro_tbel_337, retro_tbel_3378, retro_tbel_3425, retro_tbel_3442, retro_tbel_3484, retro_tbel_3500, retro_tbel_3519, retro_tbel_3578, retro_tbel_3580, retro_tbel_3618, retro_tbel_3637, retro_tbel_3710, retro_tbel_3722, retro_tbel_3745, retro_tbel_3775, retro_tbel_3780, retro_tbel_3794, retro_tbel_3801, retro_tbel_381, retro_tbel_3812, retro_tbel_3846, retro_tbel_3869, retro_tbel_3873, retro_tbel_398, retro_tbel_3982, retro_tbel_3996, retro_tbel_4033, retro_tbel_4069, retro_tbel_4158, retro_tbel_4161, retro_tbel_4174, retro_tbel_4235, retro_tbel_4247, retro_tbel_4286, retro_tbel_4297, retro_tbel_4363, retro_tbel_4374, retro_tbel_461, retro_tbel_4612, retro_tbel_4646, retro_tbel_466, retro_tbel_488, retro_tbel_503, retro_tbel_510, retro_tbel_577, retro_tbel_599, retro_tbel_626, retro_tbel_696, retro_tbel_718, retro_tbel_741, retro_tbel_744, retro_tbel_780, retro_tbel_788, retro_tbel_872, retro_tbel_886, retro_tbel_891, retro_tbel_908, retro_tbel_914, retro_tbel_942,
Tarsius syrichta ENSTSYG0000000542733 retrocopies
Tursiops truncatus ENSTTRG0000001644724 retrocopies



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