RetrogeneDB ID:

retro_pvam_349

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_267:159001..159371(-)
Located in intron of:ENSPVAG00000003214
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL31
Ensembl ID:ENSPVAG00000011716
Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]


Retrocopy-Parental alignment summary:






>retro_pvam_349
ATGGCTCCCTCAAAGAAGGGTGGTGAGAAGAAGGGCCATTCTGCCATCGATGAGATAGTGACCAGAAAATACACCATTGA
CATTCACAAGCGCATCCAAAGTGGGTTTCAAGAAGCTTGCCCTTTGGGCCCTCAAAAAGATCTGGAAATTTGCCACGAAA
AAGATAGGAACTTAAGATGTGCAAACCGACACCAGACTCAACGAAGCTGTCTGGGACAGAAGAATAAGGAATGTCCCATA
CCACATCTGGGTGCAGTTATGCAGAAAACGTAATGAGGATGAAGATTCGCCAAACAAGCTCTATATGTTGGTCACCTATG
TACCTGTTGCCACCTTCAGAAATCTACAAACAGTTAATGTGGATGAGAAC

ORF - retro_pvam_349 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.02 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAPAKKGSEKKKGRSAINEVVTREYTINIHKRIHGVGF-KKRAPRALKEIRKFAMKEMGTPDVRIDTRLN
MAP.KKG.EKK.G.SAI.E.VTR.YTI.IHKRI...GF.KK.A..ALK.I.KFA.K..GT.DV..DTRLN
RetrocopyMAPSKKGGEKK-GHSAIDEIVTRKYTIDIHKRIQS-GF>KKLALWALKKIWKFATKKIGT*DVQTDTRLN
ParentalKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN
.AVW...IRNVPY.I.V.L.RKRNEDEDSPNKLY.LVTYVPV.TF.NLQTVNVDEN
RetrocopyEAVWDRRIRNVPYHIWVQLCRKRNEDEDSPNKLYMLVTYVPVATFRNLQTVNVDEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_349 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 83 retrocopies.

Species Parental gene accession Retrocopies number
Latimeria chalumnae ENSLACG000000136031 retrocopy
Loxodonta africana ENSLAFG0000002787312 retrocopies
Macropus eugenii ENSMEUG000000009638 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Otolemur garnettii ENSOGAG0000001449410 retrocopies
Pongo abelii ENSPPYG000000258704 retrocopies
Pteropus vampyrus ENSPVAG00000011716 17 retrocopies
Sus scrofa ENSSSCG000000081704 retrocopies
Sus scrofa ENSSSCG000000251806 retrocopies



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