RetrogeneDB ID:

retro_ogar_3

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873632.1:3173300..3173678(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027429
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000014494
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_3
ATGGCTCTCACAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGGTCTGCCATTAACAAGGTGGTGACCCGAGAATACACTAT
CAATATTCACAAGCGCATCCAAGGAGTGGGATCCAAGAAGCATGCCCCTCGGGCACTCAAAGAGATCCGGAAATTTGCCA
GGAAAGAGATGGGAACTCCAGATGTGCACATTGATACCAGGCTTAACAAAGCTGTCTGGGCCAAAGGCATAAGAAATGTC
CTATACCGTATCTGTGTGCGGTTATCTAGAAAATGCAATGAAGATGAAGATTCACCAAACAAGCTCTATACTTTGGTTAC
CTGTGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAACGTGGATGAGAACTAA

ORF - retro_ogar_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.4 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
MA..KKGGEKKKGRSAIN.VVTREYTINIHKRI.GVG.KK.APRALKEIRKFA.KEMGTPDV.IDTRLNK
RetrocopyMALTKKGGEKKKGRSAINKVVTREYTINIHKRIQGVGSKKHAPRALKEIRKFARKEMGTPDVHIDTRLNK
ParentalAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN
AVWAKGIRNV.YRI.VRLSRK.NEDEDSPNKLYTLVT.VPVTTFKNLQTVNVDEN
RetrocopyAVWAKGIRNVLYRICVRLSRKCNEDEDSPNKLYTLVTCVPVTTFKNLQTVNVDEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 343 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000079141 retrocopy
Ailuropoda melanoleuca ENSAMEG000000156472 retrocopies
Cavia porcellus ENSCPOG000000210315 retrocopies
Dipodomys ordii ENSDORG000000157283 retrocopies
Equus caballus ENSECAG0000002407913 retrocopies
Felis catus ENSFCAG0000002643013 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Loxodonta africana ENSLAFG0000002787312 retrocopies
Macropus eugenii ENSMEUG000000009638 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Monodelphis domestica ENSMODG000000017045 retrocopies
Mustela putorius furoENSMPUG000000121972 retrocopies
Otolemur garnettii ENSOGAG00000014494 10 retrocopies
Ochotona princeps ENSOPRG0000000120434 retrocopies
Procavia capensis ENSPCAG0000000478710 retrocopies
Pongo abelii ENSPPYG000000258704 retrocopies
Pteropus vampyrus ENSPVAG0000001171617 retrocopies
Rattus norvegicus ENSRNOG000000135088 retrocopies
Sarcophilus harrisii ENSSHAG000000117063 retrocopies
Sus scrofa ENSSSCG000000081704 retrocopies
Sus scrofa ENSSSCG000000251806 retrocopies
Tupaia belangeri ENSTBEG00000016254137 retrocopies
retro_tbel_1092, retro_tbel_1129, retro_tbel_115, retro_tbel_1176, retro_tbel_1195, retro_tbel_1226, retro_tbel_1239, retro_tbel_1249, retro_tbel_1254, retro_tbel_1258, retro_tbel_1266, retro_tbel_131, retro_tbel_1310, retro_tbel_1334, retro_tbel_1356, retro_tbel_1368, retro_tbel_1369, retro_tbel_1381, retro_tbel_1402, retro_tbel_1414, retro_tbel_1423, retro_tbel_1437, retro_tbel_1454, retro_tbel_1574, retro_tbel_1593, retro_tbel_1597, retro_tbel_1605, retro_tbel_1611, retro_tbel_1612, retro_tbel_1632, retro_tbel_1768, retro_tbel_1797, retro_tbel_1802, retro_tbel_184, retro_tbel_189, retro_tbel_1890, retro_tbel_1897, retro_tbel_1915, retro_tbel_2024, retro_tbel_2027, retro_tbel_2050, retro_tbel_2069, retro_tbel_2093, retro_tbel_2140, retro_tbel_2159, retro_tbel_2233, retro_tbel_2341, retro_tbel_2359, retro_tbel_2382, retro_tbel_246, retro_tbel_2520, retro_tbel_2531, retro_tbel_2581, retro_tbel_2582, retro_tbel_2614, retro_tbel_2625, retro_tbel_2668, retro_tbel_2692, retro_tbel_2709, retro_tbel_2741, retro_tbel_2789, retro_tbel_2825, retro_tbel_2847, retro_tbel_2930, retro_tbel_2951, retro_tbel_3015, retro_tbel_3028, retro_tbel_3035, retro_tbel_3061, retro_tbel_3077, retro_tbel_3154, retro_tbel_3174, retro_tbel_3222, retro_tbel_3274, retro_tbel_3282, retro_tbel_3292, retro_tbel_3346, retro_tbel_3365, retro_tbel_337, retro_tbel_3378, retro_tbel_3425, retro_tbel_3442, retro_tbel_3484, retro_tbel_3500, retro_tbel_3519, retro_tbel_3578, retro_tbel_3580, retro_tbel_3618, retro_tbel_3637, retro_tbel_3710, retro_tbel_3722, retro_tbel_3745, retro_tbel_3775, retro_tbel_3780, retro_tbel_3794, retro_tbel_3801, retro_tbel_381, retro_tbel_3812, retro_tbel_3846, retro_tbel_3869, retro_tbel_3873, retro_tbel_398, retro_tbel_3982, retro_tbel_3996, retro_tbel_4033, retro_tbel_4069, retro_tbel_4158, retro_tbel_4161, retro_tbel_4174, retro_tbel_4235, retro_tbel_4247, retro_tbel_4286, retro_tbel_4297, retro_tbel_4363, retro_tbel_4374, retro_tbel_461, retro_tbel_4612, retro_tbel_4646, retro_tbel_466, retro_tbel_488, retro_tbel_503, retro_tbel_510, retro_tbel_577, retro_tbel_599, retro_tbel_626, retro_tbel_696, retro_tbel_718, retro_tbel_741, retro_tbel_744, retro_tbel_780, retro_tbel_788, retro_tbel_872, retro_tbel_886, retro_tbel_891, retro_tbel_908, retro_tbel_914, retro_tbel_942,
Tursiops truncatus ENSTTRG0000001644724 retrocopies



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