RetrogeneDB ID: | retro_tbel_1842 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5861:170343..170704(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSTBEG00000013626 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 73.98 % |
Parental protein coverage: | 93.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVRMNVLADALKSINNA-EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRL |
MV..NVL.DALK..NNA..KRGK.QVLIRPCSKVIV.FL..MMKH.YIGEFEIIDDHRAGKIVVNLT..L | |
Retrocopy | MVLVNVLVDALKCNNNA<RKRGKCQVLIRPCSKVIVQFLIMMMKHDYIGEFEIIDDHRAGKIVVNLTDQL |
Parental | NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAG-IMDHEEARRKHT |
..CG..S.RFD..LKDLE.WQ.NLLPS..F.FIVLTTSA..IM.HEEAR...T | |
Retrocopy | GNCGMTSLRFDI*LKDLENWQSNLLPSHPFDFIVLTTSAA<IMNHEEARKMET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |