Parental gene:

RPS15A, ENSLAFG00000026996

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_65:524063..530141(-)


>ENSLAFG00000026996
ATGGTGCGCATGAATGTCCTGGCCGATGCCCTTAAGAGCATCAATAATGCCGAGAAGAGAGGCAAACGTCAGGTTCTTAT
CAGGCCATGCTCAAAGGTCATTGTTCGGTTTCTAACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTG
ATGATCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGTTAAACAAGTGTGGAGTGATCAGCCCCAGATTTGAT
GTGCAACTCAAAGATCTAGAAAAGTGGCAGAATAATCTGCTCCCGTCCCGTCAGTTTGGCTTTTCATGTACTGACGACTC
AGCTGGCATCATGGACCACGAGGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2many 18 retrogenes
Bos taurus ENSBTAG00000020733 ortholog_one2many 5 retrogenes
Choloepus hoffmanni ENSCHOG00000012210 ortholog_one2one 12 retrogenes
Callithrix jacchus ENSCJAG00000020071 ortholog_one2many 6 retrogenes
Cavia porcellus ENSCPOG00000021695 ortholog_one2many 12 retrogenes
Dasypus novemcinctus ENSDNOG00000008341 ortholog_one2one 45 retrogenes
Dipodomys ordii ENSDORG00000001557 ortholog_one2one 5 retrogenes
Equus caballus ENSECAG00000019293 ortholog_one2many 2 retrogenes
Felis catus ENSFCAG00000010625 ortholog_one2many 11 retrogenes
Homo sapiens ENSG00000134419 ortholog_one2one 37 retrogenes
Gorilla gorilla ENSGGOG00000026299 ortholog_one2many 32 retrogenes
Gadus morhua ENSGMOG00000005862 ortholog_one2many 1 retrogene
Latimeria chalumnae ENSLACG00000011476 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000003956 ortholog_one2one 14 retrogenes
Microcebus murinus ENSMICG00000012241 ortholog_one2one 20 retrogenes
Myotis lucifugus ENSMLUG00000005660 ortholog_one2many 15 retrogenes
Macaca mulatta ENSMMUG00000005593 ortholog_one2many 3 retrogenes
Monodelphis domestica ENSMODG00000005920 ortholog_one2many 6 retrogenes
Mustela putorius furo ENSMPUG00000013424 ortholog_one2many 12 retrogenes
Mus musculus ENSMUSG00000008683 ortholog_one2one 29 retrogenes
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2many 25 retrogenes
Otolemur garnettii ENSOGAG00000013199 ortholog_one2many 14 retrogenes
Procavia capensis ENSPCAG00000002934 ortholog_one2one 5 retrogenes
Pongo abelii ENSPPYG00000007139 ortholog_one2many 2 retrogenes
Pan troglodytes ENSPTRG00000007823 ortholog_one2many 2 retrogenes
Pteropus vampyrus ENSPVAG00000002901 ortholog_one2one 14 retrogenes
Rattus norvegicus ENSRNOG00000018320 ortholog_one2many 5 retrogenes
Sarcophilus harrisii ENSSHAG00000017293 ortholog_one2one 6 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2many 26 retrogenes
Tupaia belangeri ENSTBEG00000013626 ortholog_one2one 86 retrogenes
Tarsius syrichta ENSTSYG00000007627 ortholog_one2one 45 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_210 78.95 100.00
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2. retro_lafr_236 72.97 84.62
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3. retro_lafr_247 80.90 67.69
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4. retro_lafr_309 67.37 72.31
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5. retro_lafr_323 75.26 73.08
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6. retro_lafr_356 70.15 100.00
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7. retro_lafr_571 67.23 90.77
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8. retro_lafr_613 71.20 95.38
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9. retro_lafr_629 73.91 70.00
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10. retro_lafr_759 75.28 68.46
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11. retro_lafr_956 62.79 65.38
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12. retro_lafr_1161 65.41 100.00
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13. retro_lafr_1201 70.15 100.00
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Download FASTA sequences of all ENSLAFG00000026996 retrocopies