Parental gene:

ENSCJAG00000020071

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:18368857..18377755(-)


>ENSCJAG00000020071
ATGGTGCGCATGAATGTCCTGGCTGATGCTCTCAAGAGCATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTGCTTAT
TAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTG
ATGATCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGCTAAACAAGTGTGGTGTGATCAGCCCCAGATTTGAT
GTGCAACTCAAAGATCTAGAAAAATGGCAGAATAATCTGCTTCCGTCCCGCCAGTTTGGTTTCATTGTATTGACAACCTC
AGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Library Parental gene expression (RPM)
SRP051959_colon 70 .98 RPM
SRP051959_heart 63 .55 RPM
SRP051959_kidney 73 .37 RPM
SRP051959_liver 98 .14 RPM
SRP051959_lung 83 .34 RPM
SRP051959_lymph_node 192 .32 RPM
SRP051959_skeletal_muscle 63 .35 RPM
SRP051959_spleen 121 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2many 18 retrogenes
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
Cavia porcellus ENSCPOG00000021695 ortholog_one2many 12 retrogenes
Dasypus novemcinctus ENSDNOG00000008341 ortholog_one2many 45 retrogenes
Dipodomys ordii ENSDORG00000001557 ortholog_one2many 5 retrogenes
Equus caballus ENSECAG00000019293 ortholog_one2many 2 retrogenes
Felis catus ENSFCAG00000010625 possible_ortholog 11 retrogenes
Homo sapiens ENSG00000134419 ortholog_one2many 37 retrogenes
Gorilla gorilla ENSGGOG00000026299 ortholog_one2many 32 retrogenes
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
Macropus eugenii ENSMEUG00000003956 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000012241 ortholog_one2many 20 retrogenes
Myotis lucifugus ENSMLUG00000005660 possible_ortholog 15 retrogenes
Macaca mulatta ENSMMUG00000005593 ortholog_one2many 3 retrogenes
Monodelphis domestica ENSMODG00000005920 possible_ortholog 6 retrogenes
Mustela putorius furo ENSMPUG00000013424 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000008683 possible_ortholog 29 retrogenes
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2many 25 retrogenes
Otolemur garnettii ENSOGAG00000013199 ortholog_one2many 14 retrogenes
Procavia capensis ENSPCAG00000002934 possible_ortholog 5 retrogenes
Pongo abelii ENSPPYG00000007139 ortholog_one2many 2 retrogenes
Pan troglodytes ENSPTRG00000007823 ortholog_one2many 2 retrogenes
Pteropus vampyrus ENSPVAG00000002901 ortholog_one2many 14 retrogenes
Rattus norvegicus ENSRNOG00000018320 possible_ortholog 5 retrogenes
Sarcophilus harrisii ENSSHAG00000017293 possible_ortholog 6 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2many 26 retrogenes
Tupaia belangeri ENSTBEG00000013626 possible_ortholog 86 retrogenes
Tarsius syrichta ENSTSYG00000007627 possible_ortholog 45 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_80 92.31 100.00
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2. retro_cjac_120 88.37 99.23
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3. retro_cjac_128 99.23 100.00
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4. retro_cjac_170 100.00 100.00
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5. retro_cjac_231 90.00 100.00
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6. retro_cjac_359 92.31 100.00
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Download FASTA sequences of all ENSCJAG00000020071 retrocopies