RetrogeneDB ID: | retro_mdom_717 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:203522818..203523178(+) | ||
Located in intron of: | ENSMODG00000012010 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSMODG00000005920 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 80.17 % |
Parental protein coverage: | 93.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRF |
ALKS.N.AEK.GK.QV.IR.CSKVIVRFLTV.MK..Y.GE.EIIDDHRAGKI.VNLTGRLNKCGVI..R. | |
Retrocopy | ALKSNNKAEK*GKGQVSIRLCSKVIVRFLTVKMKRSYVGELEIIDDHRAGKI-VNLTGRLNKCGVIRTRL |
Parental | DVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
D.QLKDLEKWQNN.LP..QFG.IVLTTS.GI.D.EEARRKHT.GKILGFFF | |
Retrocopy | DIQLKDLEKWQNNQLPPCQFGSIVLTTSDGIKDNEEARRKHTRGKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |