RetrogeneDB ID: | retro_tnig_32 | ||
Retrocopylocation | Organism: | Tetraodon (Tetraodon nigroviridis) | |
Coordinates: | Un_random:31136503..31137393(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | sfpq | ||
Ensembl ID: | ENSTNIG00000011331 | ||
Aliases: | None | ||
Description: | splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:ZFIN;Acc:ZDB-GENE-040426-2452] |
Percent Identity: | 61.07 % |
Parental protein coverage: | 50.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GPQQGQRLGPQQNQRS-GQQQVHKATPITIKREDGQEFKATLSMLLKPGEKRYTQRCRLFIGNLPNDITE |
GPQQ.........Q...G........P..............L....KPGEK..TQR.RLF.GNLP....E | |
Retrocopy | GPQQNHGFNRSGEQKKPGGTNTNGQPPELSEQNSNEALTLDLQSFRKPGEKTFTQRSRLFVGNLPAGVIE |
Parental | DAFKKLFAKYGEPSEVFINKGKGFGFIRLESRALAEIAKAELDDTPMKGRPLRVRFATHSAALSVKNLSP |
.....LFAKYG..SE.FINK..GFGFIRLE.R..AEIA.AELDDTP..GRP.RVRFATH.AAL.VKNL.. | |
Retrocopy | EDLERLFAKYGKASEIFINKERGFGFIRLETRIIAEIARAELDDTPFRGRPIRVRFATHGAALTVKNLPE |
Parental | FVSNELLEEAFSQFGMVERAVVIVDDRGRST-GKG-IVEFASKPAARKALDRCNEGVFLLTSSPRPVVVE |
FVSNELLEEAF..FG..ERAVV.VDDRGR.T.G.G.IVE..SKPAARKALD.C..G..LLT..PRPV.VE | |
Retrocopy | FVSNELLEEAFAVFGQIERAVVVVDDRGRPT<GEGDIVEYTSKPAARKALDKCSDGSYLLTAFPRPVTVE |
Parental | PLEQFDDEDGLPEKLAQKNPRYQAEREEPPRFARPGTFEFEYAKRWKSLDEMEKQQRQQVEKNMQEAREK |
P.EQ.DD..GLPEKL..KN..Y..ERE.PPRFA.PG.FE.EYA.RWK.L.EMEKQQ...V..NM.EA.EK | |
Retrocopy | PMEQLDDDEGLPEKLVNKNQQYHKEREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYDMVDRNMKEAQEK |
Parental | LEAEMEDAFHEHQANLLR |
LEAEME.A.HEHQ..L.. | |
Retrocopy | LEAEMEAARHEHQVMLMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003595 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001431 | 4 retrocopies | |
Felis catus | ENSFCAG00000031287 | 1 retrocopy | |
Gasterosteus aculeatus | ENSGACG00000002034 | 1 retrocopy | |
Gadus morhua | ENSGMOG00000011950 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014082 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001877 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000017737 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016107 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000011331 | 1 retrocopy |
retro_tnig_32 ,
|
Takifugu rubripes | ENSTRUG00000003783 | 1 retrocopy | |
Drosophila melanogaster | FBgn0004227 | 1 retrocopy |