Parental gene: | ENSCJAG00000001431 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:69500267..69507919(-) |
>ENSCJAG00000001431
CAGCACCACCCGCCCTACCACCAGCAGCACCACCAGGGGCCCCCGCCCGTTGGGCCCGGCGGCCGCAGCGAGGAGAAAAT
CTCGGACTCGGAGGGGTTTAAAGCCAACTTGTCACTCTTGAGGAGGCCTGGAGAGAAAACTTACACACAGCGGTGTCGGT
TGTTTGTTGGGAATCTACCTGCTGATATCACGGAAGATGAATTCAAAAGACTATTTGCTAAATATGGAGAACCTGGAGAA
GTTTTTATCAACAAAGGCAAAGGATTCGGATTTATTAAGCTTGAATCCAGAGCTTTGGCTGAAATTGCCAAAGCTGAGCT
CGATGATACGCCCATGAGAGGTAGACAGCTTCGAGTTCGCTTTGCCACACATGCTGCTGCCCTTTCTGTTCGTAATCTTT
CACCTTACGTTTCCAATGAACTGTTGGAAGAAGCCTTCAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATAGTGGAT
GATCGTGGAAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAACCAGCAGCAAGAAAGGCATTTGAACGATGCAG
TGAAGGTGTTTTCTTGCTGACAACAACTCCTCGTCCAGTCATCGTGGAACCACTTGAACAGCTAGATGATGAAGATGGTC
TTCCTGAAAAGCTTGCACAGAAGAATCCAATGTATCAAAAAGAGAGAGAAACTCCTCCTCGTTTTGCCCAGCATGGCACA
TTTGAGTACGAATATTCTCAGCGATGGAAGTCGTTGGATGAAATGGAAAAACAGCAAAGAGAACAAGTTGAAAAAAATAT
GAAGGATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTCTGCGCCAAGATC
TGATGAGACGACAGGAAGAATTAAGACGCATGGAAGAACTTCATAATCAAGAAATGCAGAAACGTAAAGAAATGCAATTG
AGGCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAGCGTGAGATGGAAGAACAAATGAGGCGCCA
AAGAGAGGAAAGTTATAGCCGAATGGGCTACATGGATCCAAGAGAAAGAGACATGACTATGGGTGGCGGAGGAGCAATGA
ACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAAT
CCTGGAGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGTGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGC
GGGGCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTACG
AAGGCCCAAACAAAAAACCCCGATTTTAG
CAGCACCACCCGCCCTACCACCAGCAGCACCACCAGGGGCCCCCGCCCGTTGGGCCCGGCGGCCGCAGCGAGGAGAAAAT
CTCGGACTCGGAGGGGTTTAAAGCCAACTTGTCACTCTTGAGGAGGCCTGGAGAGAAAACTTACACACAGCGGTGTCGGT
TGTTTGTTGGGAATCTACCTGCTGATATCACGGAAGATGAATTCAAAAGACTATTTGCTAAATATGGAGAACCTGGAGAA
GTTTTTATCAACAAAGGCAAAGGATTCGGATTTATTAAGCTTGAATCCAGAGCTTTGGCTGAAATTGCCAAAGCTGAGCT
CGATGATACGCCCATGAGAGGTAGACAGCTTCGAGTTCGCTTTGCCACACATGCTGCTGCCCTTTCTGTTCGTAATCTTT
CACCTTACGTTTCCAATGAACTGTTGGAAGAAGCCTTCAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATAGTGGAT
GATCGTGGAAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAACCAGCAGCAAGAAAGGCATTTGAACGATGCAG
TGAAGGTGTTTTCTTGCTGACAACAACTCCTCGTCCAGTCATCGTGGAACCACTTGAACAGCTAGATGATGAAGATGGTC
TTCCTGAAAAGCTTGCACAGAAGAATCCAATGTATCAAAAAGAGAGAGAAACTCCTCCTCGTTTTGCCCAGCATGGCACA
TTTGAGTACGAATATTCTCAGCGATGGAAGTCGTTGGATGAAATGGAAAAACAGCAAAGAGAACAAGTTGAAAAAAATAT
GAAGGATGCAAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTCTGCGCCAAGATC
TGATGAGACGACAGGAAGAATTAAGACGCATGGAAGAACTTCATAATCAAGAAATGCAGAAACGTAAAGAAATGCAATTG
AGGCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAGCGTGAGATGGAAGAACAAATGAGGCGCCA
AAGAGAGGAAAGTTATAGCCGAATGGGCTACATGGATCCAAGAGAAAGAGACATGACTATGGGTGGCGGAGGAGCAATGA
ACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAAT
CCTGGAGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGTGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGC
GGGGCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTACG
AAGGCCCAAACAAAAAACCCCGATTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 63 .68 RPM |
| SRP051959_skeletal_muscle | 38 .28 RPM |
| SRP051959_lymph_node | 74 .06 RPM |
| SRP051959_lung | 64 .50 RPM |
| SRP051959_liver | 35 .29 RPM |
| SRP051959_kidney | 64 .63 RPM |
| SRP051959_heart | 57 .15 RPM |
| SRP051959_colon | 53 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003595 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000036744 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000031287 | ortholog_one2many | 1 retrogene | |
| Gasterosteus aculeatus | ENSGACG00000002034 | ortholog_one2many | 1 retrogene | |
| Gadus morhua | ENSGMOG00000011950 | ortholog_many2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014082 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001877 | ortholog_one2many | 1 retrogene | |
| Oreochromis niloticus | ENSONIG00000017737 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000016107 | ortholog_many2many | 1 retrogene | |
| Tetraodon nigroviridis | ENSTNIG00000011331 | ortholog_one2many | 1 retrogene | |
| Takifugu rubripes | ENSTRUG00000003783 | ortholog_one2many | 1 retrogene | |
| Drosophila melanogaster | FBgn0004227 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_486 | 72.03 | 50.65 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1073 | 79.21 | 59.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2542 | 93.33 | 93.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2697 | 91.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001431 retrocopies