Parental gene:

SFPQ, ENSOCUG00000001877

Aliases:None
Description:splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018704:3153501..3160784(+)


>ENSOCUG00000001877
GGTCAAGGGCCTAACAGGGTTTCGGGGCCCAGGGGGGGCCAAAAGGGCGGGAAAAAGCCCTGCGGGGCCGAAGCCCCGCG
GCGGCCTTGCGGCGGCCGCAAACCCAGGGCGGCCACCCCGAAGCCCCCCCGCTGCTGCCCACTCACCGGCGGTCGGGGGG
GGCAGCCAAGCATTCATCACCCGCCCTACCACCAGCAGCACCACCGCGAGGAGAAGATCTCGGACTCGGAGGGGTTTAAA
GCCAACTTGTCTCTGTTGAGGAGACCTGGAGAGAAAACTTACACACAGCGCTGTCGGTTGTTTGTGGGAAATCTACCTGC
TGATATCACAGAGGATGAATTCAAAAGGTTATTTGCTAAATACGGAGAACCAGGAGAAGTTTTTATCAACAAAGGCAAAG
GATTCGGATTTATTAAACTTGAATCTAGAGCTTTGGCTGAAATCGCCAAAGCCGAACTTGATGATACGCCCATGAGGGGT
AGACAGCTTCGAGTTCGCTTTGCCACCCACGCTGCCGCCCTGTCTGTTCGTAATCTTTCACCATATGTTTCCAATGAACT
GTTGGAAGAAGCCTTTAGCCAGTTTGGCCCTATTGAAAGGGCTGTTGTAATTGTGGATGATAGAGGAAGATCTACAGGGA
AAGGCATTGTTGAATTTGCTTCGAAACCAGCAGCAAGAAAAGCATTTGAACGATGTAGTGAAGGTGTTTTCTTACTGACA
ACAACTCCTCGTCCAGTCATTGTGGAACCACTCGAACAGTTAGATGATGAAGATGGTCTTCCTGAGAAGCTTGCACAGAA
GAATCCGATGTATCAAAAGGAGAGAGAAACTCCTCCACGCTTTGCTCAGCATGGCACGTTTGAATATGAATACTCTCAGC
GATGGAAGTCTTTGGATGAAATGGAGAAACAGCAGAGGGAACAAGTTGAAAAAAATATGAAGGATGCAAAAGATAAATTG
GAAAGTGAAATGGAAGATGCCTATCATGAACATCAGGCAAATCTTTTGCGCCAAGATCTAATGAGACGTCAGGAAGAATT
AAGACGTATGGAAGAACTTCACAATCAAGAAATGCAGAAACGTAAAGAAATGCAGTTGAGGCAAGAGGAAGAACGACGTA
GAAGGGAGGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGACGCCAAAGGGAGGAAAGTTACAGTCGT
ATGGGCTACATGGATCCAAGAGAAAGAGACATGAGAATGGGAGGTGGAGGAGCAATGAACATGGGAGATCCCTATGGTTC
AGGAGGCCAGAAATTTCCACCTCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAACCCTGGAGTTCCACCAGCAACCA
TGAGTGGTTCCATGATGGGAAGTGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGGCCTGTGGGTGGACAGGGT
CCTAGAGGAATGGGGCCTGGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGCCCCAACAAAAAGCCCCG
ATTTTAG

Library Parental gene expression (RPM)
SRP017611_liver 42 .93 RPM
SRP017611_kidney 114 .03 RPM
SRP017611_brain 147 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003595 ortholog_one2many 1 retrogene
retro_cfam_198,
Callithrix jacchus ENSCJAG00000001431 ortholog_one2many 4 retrogenes
retro_cjac_1073, retro_cjac_2542, retro_cjac_2697, retro_cjac_486,
Felis catus ENSFCAG00000031287 ortholog_one2one 1 retrogene
retro_fcat_1989,
Gasterosteus aculeatus ENSGACG00000002034 ortholog_one2one 1 retrogene
retro_gacu_13,
Gadus morhua ENSGMOG00000011950 ortholog_one2many 1 retrogene
retro_gmor_20,
Macropus eugenii ENSMEUG00000014082 ortholog_one2one 1 retrogene
retro_meug_164,
Oryctolagus cuniculus ENSOCUG00000021848 within_species_paralog 2 retrogenes
retro_ocun_1317, retro_ocun_1804,
Oreochromis niloticus ENSONIG00000017737 ortholog_one2one 1 retrogene
retro_onil_21,
Sarcophilus harrisii ENSSHAG00000016107 ortholog_one2many 1 retrogene
retro_shar_36,
Tetraodon nigroviridis ENSTNIG00000011331 ortholog_one2one 1 retrogene
retro_tnig_32,
Takifugu rubripes ENSTRUG00000003783 ortholog_one2one 1 retrogene
retro_trub_8,
Drosophila melanogaster FBgn0004227 ortholog_many2many 1 retrogene
retro_dmel_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1834 88.85 54.13
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Download FASTA sequences of all ENSOCUG00000001877 retrocopies