Parental gene:

ENSCAFG00000003595

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:15:6880064..6887975(+)


>ENSCAFG00000003595
ATGTCTCGGGACCGGTTCCGGAGCCGCGGCGGCGGCGGCGGCGGCTTCCACCGGCGCGGAGGCGGCGGCGGCCGCGGTGG
CCTCCACGACTTCCGCTCCCCGCCGCCCGGCATGGGCCTCAATCAGAACCGGGGACCCATGGGGCCCGGCCCGGGCCAGG
GCGGCCCCAAGCCCCCGATCCCGCCACTCCAGCCTGTGGGTCCTCAGGGGCCCGGCCCGGCGCCGGGAGTGGGCAGCGCG
CCGCCGGCCTCCGGCTCGGCACCGCCCGCGACTCCTCCGACCTCGGGGGCCCCTGCGGGCCCGGGGCCCACCCCGACTCC
GCCGCCCGCCGTCACCTCGGCGCCGCCTGGGGCGCCCCCGCCCGCGCCGCCGAGCAGCGGGGTCCCCACCACCCCGCCCC
AGGCCGGGGGCCCGCCGCCTCCGCCCGCAGGGGGCCCGGGCCCGGGGCCTAAACAGGGCCCAGGCCCCGGAGGCCCGAAA
GGCGGCAAAATGCCGGGCGGGCCGAAGCCCGGCGGCGGCCCGGGCCTGAGTACCCCCGGCGGCCACCCCAAGCCGCCGCA
TCGGGGCGGCGGGGAGCCGCGCGGAGGGCGGCAGCACCACCCGCCCTACCACCAGCAGCACCACCAGGGGCCCCCGCCCG
GCGGGCCCGTCGGCCGCAGCGAGGAGAAGATCTCCGACTCGGAGGGGTTCAAAGCCAACTTGTCGCTCCTGAGGAGGCCC
GGAGAGAAAACCTATACGCAGCGCTGCCGGTTGTTTGTCGGGAATCTACCTGCTGACATCACGGAGGATGAATTCAAAAG
ACTCTTTGCTAAATACGGAGAACCAGGAGAAGTTTTTATCAACAAAGGCAAAGGATTTGGGTTTATTAAACTTGAATCTA
GGGCATTGGCTGAAATTGCCAAAGCTGAACTGGATGATACACCCATGAGGGGTAGGCAGCTTCGGGTTCGCTTTGCCACA
CATGCTGCTGCCTTGTCCGTGCGAAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAGAAGCCTTTAGCCAATTTGG
TCCTATTGAGAGGGCTGTTGTAATTGTGGATGATCGTGGGAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAAC
CAGCGGCAAGAAAAGCATTTGAAAGATGCAGCGAAGGTGTTTTCTTACTGACAACAACGCCTCGTCCAGTCATTGTGGAA
CCACTTGAACAATTAGATGATGAAGATGGCCTTCCTGAAAAACTTGCACAGAAGAATCCAATGTATCAAAAGGAGAGAGA
AACACCTCCTCGTTTTGCCCAGCATGGCACATTTGAGTATGAATATTCTCAGCGATGGAAGTCCCTGGATGAAATGGAAA
AACAGCAAAGGGAACAAGTTGAAAAAAACATGAAAGATGCGAAAGACAAATTGGAAAGTGAAATGGAAGATGCCTATCAT
GAGCATCAGGCAAATCTTTTGCGTCAAGATCTGATGAGACGCCAGGAAGAATTAAGACGCATGGAAGAACTTCACAATCA
AGAAATGCAGAAACGTAAAGAAATGCAACTGAGGCAAGAAGAAGAACGGCGTAGAAGGGAAGAAGAGATGATGATTCGGC
AGCGTGAGATGGAAGAACAAATGCGACGCCAAAGAGAGGAAAGTTATAGCCGGATGGGCTACATGGATCCAAGAGAAAGA
GACATGAGAATGGGTGGTGGAGGAGCAATGAACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGG
TGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGAGTCCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGCGACA
TGCGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGACCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCA
GCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGCCCAAACAAAAAGCCCCGATTTTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 189 .75 RPM
SRP017611_brain 74 .23 RPM
SRP017611_kidney 62 .80 RPM
SRP017611_liver 36 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017071 within_species_paralog 1 retrogene
retro_cfam_98,
Callithrix jacchus ENSCJAG00000001431 ortholog_many2many 4 retrogenes
retro_cjac_1073, retro_cjac_2542, retro_cjac_2697, retro_cjac_486,
Felis catus ENSFCAG00000031287 ortholog_one2many 1 retrogene
retro_fcat_1989,
Gasterosteus aculeatus ENSGACG00000002034 ortholog_one2many 1 retrogene
retro_gacu_13,
Gadus morhua ENSGMOG00000011950 ortholog_many2many 1 retrogene
retro_gmor_20,
Macropus eugenii ENSMEUG00000014082 ortholog_one2many 1 retrogene
retro_meug_164,
Oryctolagus cuniculus ENSOCUG00000001877 ortholog_one2many 1 retrogene
retro_ocun_1834,
Oreochromis niloticus ENSONIG00000017737 ortholog_one2many 1 retrogene
retro_onil_21,
Sarcophilus harrisii ENSSHAG00000016107 ortholog_many2many 1 retrogene
retro_shar_36,
Tetraodon nigroviridis ENSTNIG00000011331 ortholog_one2many 1 retrogene
retro_tnig_32,
Takifugu rubripes ENSTRUG00000003783 ortholog_one2many 1 retrogene
retro_trub_8,
Drosophila melanogaster FBgn0004227 ortholog_many2many 1 retrogene
retro_dmel_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_198 82.02 100.00
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Download FASTA sequences of all ENSCAFG00000003595 retrocopies