RetrogeneDB ID:

retro_tsyr_1562

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_490688:843..1104(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS15A
Ensembl ID:ENSTSYG00000007627
Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]


Retrocopy-Parental alignment summary:






>retro_tsyr_1562
CATAGTTACATTGGCAAATTTGAAATCATTGATGATCACAGAGCTGGAAAAATTGTTGTGAACCTCACAGGCAGGTTAAA
CAAGTGTGGCGTGATCAGCCCCAGATTTGATGTGCAACTTAAAGATCTAGAAAAGTGGCAGAATAATCTGCTTCCATCCC
ACCAGTTAGGTTTCATTGTACTGACAACCTCAGCTGGCATCATGGACCACGAACAAGCAAGAAGGAAACAAACAGGAGGG
AAAATCCTGGGATTCTTTTTC

ORF - retro_tsyr_1562 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.1 %
Parental protein coverage: 67.44 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDH
H.YIG.FEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPS.Q.GFIVLTTSAGIMDH
RetrocopyHSYIGKFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSHQLGFIVLTTSAGIMDH
ParentalEEARRKHTGGKILGFFF
E.ARRK.TGGKILGFFF
RetrocopyEQARRKQTGGKILGFFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1562 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 150 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207335 retrocopies
Callithrix jacchus ENSCJAG000000200716 retrocopies
Felis catus ENSFCAG0000001062511 retrocopies
Gadus morhua ENSGMOG000000058621 retrocopy
Latimeria chalumnae ENSLACG000000114761 retrocopy
Loxodonta africana ENSLAFG0000002699613 retrocopies
Mustela putorius furoENSMPUG0000001342412 retrocopies
Mus musculus ENSMUSG0000000868329 retrocopies
Otolemur garnettii ENSOGAG0000001319914 retrocopies
Procavia capensis ENSPCAG000000029345 retrocopies
Pan troglodytes ENSPTRG000000078232 retrocopies
Sarcophilus harrisii ENSSHAG000000172936 retrocopies
Tarsius syrichta ENSTSYG00000007627 45 retrocopies



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