RetrogeneDB ID: | retro_tsyr_531 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_13381:15347..15823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRTCAP2 | ||
Ensembl ID: | ENSTSYG00000013228 | ||
Aliases: | None | ||
Description: | keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:28942] |
Percent Identity: | 82.72 % |
Parental protein coverage: | 98.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ANCTRFGSPFLAGDSD-THWRGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGL |
AN.T.FGSPFLA.D.D.THW.GMMVVGTGTSL.LSSLLSLLLFAG.QMYS.Q.AS.EWLT.QG.LLGSGL | |
Retrocopy | ANRTSFGSPFLARDIDRTHWWGMMVVGTGTSLVLSSLLSLLLFAGIQMYSCQMASVEWLTNQGCLLGSGL |
Parental | FVFSLTAFNNLENLVFGKGFQAKI-FPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLY-YINKISST- |
FVFSLT.FNNLENLVFGKGFQ.KI.FPE.LL.LLL.LFASGLIHRVCVT.C.IFSMVGLY..INKISST. | |
Retrocopy | FVFSLTDFNNLENLVFGKGFQTKI>FPETLLSLLLTLFASGLIHRVCVTRCIIFSMVGLY<LINKISST< |
Parental | MYQATAPVLIPAKVTGKGKKRN |
.YQATAPVL.P.KV.GKGKKRN | |
Retrocopy | LYQATAPVLTPVKVNGKGKKRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011336 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017055 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009017 | 1 retrocopy | |
Felis catus | ENSFCAG00000025085 | 3 retrocopies | |
Homo sapiens | ENSG00000163463 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009303 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012180 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005647 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011864 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000347 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030271 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000756 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001410 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020542 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008829 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013228 | 2 retrocopies |
retro_tsyr_1096, retro_tsyr_531 ,
|