RetrogeneDB ID: | retro_vpac_297 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_50:76510..76902(+) | ||
Located in intron of: | ENSVPAG00000006400 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSVPAG00000006030 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 72.39 % |
Parental protein coverage: | 53.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVR-KPLNKEGKKPRTKAPKIQRLVTPRVL |
GEKDIP.L.DT.V...LGPKRA.RI..LF.L..EDDV..YVVR.K.L.KEGKKPRTK..KIQ.L.T...L | |
Retrocopy | GEKDIPVLIDTAVLHHLGPKRA-RICRLFSLCEEDDVHRYVVR<KAL-KEGKKPRTKVHKIQCLITSHLL |
Parental | QHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
QHK...IALKKQ.TKKNK..AAEYAKLLAKR.KEAKE.RQEQIAKR..LSSLRA.TSKSE.S.K | |
Retrocopy | QHKHWCIALKKQHTKKNKGKAAEYAKLLAKRRKEAKE*RQEQIAKRWWLSSLRALTSKSEPS*K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |