RetrogeneDB ID: | retro_vpac_392 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_15421:3750..4143(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSVPAG00000006030 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 68.7 % |
Parental protein coverage: | 52.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRK |
..K.KSV.GCIVDA.LSVL..VIVK.G...I..LTDTTVP..LGP.RASRI.KL..LSKE.DV.Q..V.K | |
Retrocopy | KEKEKSVQGCIVDASLSVLTFVIVKTGQEEITELTDTTVPHCLGPIRASRICKLLSLSKENDVHQCAVSK |
Parental | PLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK |
PLNK....PRTK.PKIQ.LV.P.VLQHK...IALKKQ.TK.N.EEA.EYA.LLAK.MKEAK | |
Retrocopy | PLNKKSVNPRTKVPKIQHLVSPCVLQHKHCHIALKKQHTKNNREEATEYAELLAKTMKEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |