RetrogeneDB ID: | retro_rnor_1008 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:67353188..67353712(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps6 | ||
Ensembl ID: | ENSRNOG00000049025 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S6 [Source:RefSeq peptide;Acc:NP_058856] |
Percent Identity: | 75. % |
Parental protein coverage: | 71.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KGYVVRISGGNDKQG-FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV |
KGYVVRI.GGNDKQG.FP......THGRV.LLLSKGHSCYRPR.T..R..KSVR.C.VDANLSVLNL.I. | |
Retrocopy | KGYVVRIRGGNDKQG>FP*NR--VTHGRVCLLLSKGHSCYRPRGTRARNLKSVRVCTVDANLSVLNLFIX |
Parental | KK-GEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGK-KPRTKAPKIQRLVTP |
...GEK..PGLTDTTVP..LGPKRAS.I.KLFNLSKEDDV.QY.VR.PLNK....KPRT.APKIQRLVTP | |
Retrocopy | XXXGEKEVPGLTDTTVPCQLGPKRASKI*KLFNLSKEDDVCQYIVRQPLNKDDR<KPRTTAPKIQRLVTP |
Parental | RVLQHKRRRIALKKQRTKKN-KEEAAEYAKLLAKRMKEAK |
.VLQ.....IALKKQ.TKKN..EEAAEYAKLL.KRMKEAK | |
Retrocopy | HVLQDRC*PIALKKQCTKKN<REEAAEYAKLLTKRMKEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |