RetrogeneDB - Parental gene ENSRNOG00000049025 details

                            
>ENSRNOG00000049025
CTGAATATCTCCTTCCCTGCCACTGGCTGTCAGAAACTCATAGAAGTGGATGACGAACGCAAGCTTCGTACGTTCTATGA

GAAGCGCATGGCCACAGAAGTAGCTGCTGATGCTCTTGGTGAAGAGTGGAAGGGTTATGTGGTCCGGATCAGCGGTGGGA

ATGACAAACAAGGTTTTCCCATGAAGCAAGGCGTTTTGACCCATGGCAGAGTGCGCCTGCTTTTGAGTAAGGGGCATTCT

TGTTATAGACCTAGGAGAACTGGAGAGAGGAAGCGCAAGTCTGTCCGAGGATGCATTGTGGATGCCAACCTGAGTGTTCT

CAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCAGGACTGACAGATACCACTGTGCCTCGTCGGTTGGGACCTA

AAAGAGCTAGTAGAATCCGAAAGCTTTTTAATCTCTCCAAAGAAGATGATGTCCGCCAGTATGTTGTCAGAAAGCCCTTA

AACAAAGAAGGTAAGAAGCCCAGGACCAAAGCGCCCAAGATTCAGCGTCTTGTTACTCCCCGTGTCCTGCAACACAAACG

CCGACGTATTGCTCTGAAGAAGCAACGCACTAAGAAAAACAAGGAGGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGA

GAATGAAGGAAGCCAAAGAGAAGCGCCAGGAACAGATTGCCAAGAGACGTAGGCTGTCTTCGCTGAGAGCTTCTACTTCT

AAATCTGAGTCCAGTCAAAAATAA

Library	Parental gene expression (RPM)
SRP017611_brain	0 .00 RPM
SRP017611_kidney	0 .00 RPM
SRP017611_liver	0 .00 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000017634	possible_ortholog	1 retrogene	retro_acar_20,
Ailuropoda melanoleuca	ENSAMEG00000002925	ortholog_one2one	14 retrogenes	retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Canis familiaris	ENSCAFG00000001615	possible_ortholog	4 retrogenes	retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus	ENSCJAG00000020612	possible_ortholog	6 retrogenes	retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus	ENSCPOG00000003750	possible_ortholog	4 retrogenes	retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus	ENSDNOG00000007241	ortholog_one2many	1 retrogene	retro_dnov_1192,
Equus caballus	ENSECAG00000016190	ortholog_one2one	5 retrogenes	retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis	ENSFALG00000003078	possible_ortholog	1 retrogene	retro_falb_24,
Felis catus	ENSFCAG00000002541	ortholog_one2one	26 retrogenes	retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla	ENSGGOG00000002652	ortholog_one2one	13 retrogenes	retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana	ENSLAFG00000010766	possible_ortholog	4 retrogenes	retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Microcebus murinus	ENSMICG00000007262	possible_ortholog	24 retrogenes	retro_mmur_1004, retro_mmur_1024, retro_mmur_1048, retro_mmur_1117, retro_mmur_1169, retro_mmur_1298, retro_mmur_1441, retro_mmur_1530, retro_mmur_189, retro_mmur_406, retro_mmur_414, retro_mmur_473, retro_mmur_517, retro_mmur_560, retro_mmur_723, retro_mmur_748, retro_mmur_760, retro_mmur_783, retro_mmur_794, retro_mmur_811, retro_mmur_856, retro_mmur_88, retro_mmur_907, retro_mmur_911,
Macaca mulatta	ENSMMUG00000003412	ortholog_one2one	1 retrogene	retro_mmul_263,
Monodelphis domestica	ENSMODG00000004095	possible_ortholog	1 retrogene	retro_mdom_301,
Mus musculus	ENSMUSG00000028495	possible_ortholog	45 retrogenes	retro_mmus_1010, retro_mmus_1126, retro_mmus_1291, retro_mmus_1357, retro_mmus_1436, retro_mmus_1590, retro_mmus_1663, retro_mmus_1701, retro_mmus_1720, retro_mmus_1966, retro_mmus_1969, retro_mmus_2047, retro_mmus_2068, retro_mmus_2146, retro_mmus_2167, retro_mmus_2171, retro_mmus_2336, retro_mmus_2342, retro_mmus_2367, retro_mmus_2369, retro_mmus_2489, retro_mmus_2546, retro_mmus_2593, retro_mmus_2601, retro_mmus_2625, retro_mmus_2824, retro_mmus_2845, retro_mmus_2946, retro_mmus_3154, retro_mmus_324, retro_mmus_3256, retro_mmus_3338, retro_mmus_3498, retro_mmus_3633, retro_mmus_475, retro_mmus_477, retro_mmus_478, retro_mmus_568, retro_mmus_588, retro_mmus_617, retro_mmus_716, retro_mmus_743, retro_mmus_748, retro_mmus_895, retro_mmus_938,
Ochotona princeps	ENSOPRG00000000751	possible_ortholog	6 retrogenes	retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps	ENSOPRG00000012290	possible_ortholog	5 retrogenes	retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii	ENSPPYG00000019193	possible_ortholog	15 retrogenes	retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus	ENSRNOG00000007663	within_species_paralog	21 retrogenes	retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,
Sarcophilus harrisii	ENSSHAG00000005486	possible_ortholog	1 retrogene	retro_shar_549,
Sus scrofa	ENSSSCG00000005169	ortholog_one2one	6 retrogenes	retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,
Vicugna pacos	ENSVPAG00000006030	possible_ortholog	10 retrogenes	retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_479	61.31	66.80	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_718	57.78	53.04	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_1008	75.00	71.26	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_1189	69.03	61.94	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_1988	76.77	61.94	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1990	76.77	61.94	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_2085	62.99	51.01	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_2635	51.55	76.11	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000049025 retrocopies

Parental gene:	Rps6, ENSRNOG00000049025
Aliases:	None
Description:	40S ribosomal protein S6 [Source:RefSeq peptide;Acc:NP_058856]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	5:109184688..109187016(-)

Parental gene:

Rps6, ENSRNOG00000049025