ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGACTCACTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
AATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGCGGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTA
GTGCTCTTTCATGCA
dot-bracket secondary structure
).((((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))).))
))))).))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGCGGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTA
GTGCTCTTTCATGCA
dot-bracket secondary structure
).((((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))).))
))))).))))).)))
SIMILARITIES| miRBase hvu-MIR171: 3.0E-60 PMRD hvv-miR171: 8.0E-39 microPC miR171: 8.0E-39 | UniProt no hits RFAM 1MIR171_1: 2.0E-12 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046135), hvv-miR171 from PMRD , hvv-miR170 from PMRD , miR171 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
