ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTTCCTAAATA miRNA* TTATGGAACGGAGGGAGTATG mismatches: 2 bulges: 0 |
pre-miRNA
AAATGCCATATATTAAAGTGGGATTCTTCTACTCCCTCCGTTCCTAAATATAAGTCCTTTAGTGAAATCTCTAAAACGACTTATATTATGGAACGGAGGG
AGTATGTTTTTTCTTTGGTTGGTGACGTTGGT
dot-bracket secondary structure
.((((.(((..(((((((.(((((.....(((((((((((((((..((((((((((.(((...((....))..))).))))))))))..)))))))))))
)))).)))))..)))))))..))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATGCCATATATTAAAGTGGGATTCTTCTACTCCCTCCGTTCCTAAATATAAGTCCTTTAGTGAAATCTCTAAAACGACTTATATTATGGAACGGAGGG
AGTATGTTTTTTCTTTGGTTGGTGACGTTGGT
dot-bracket secondary structure
.((((.(((..(((((((.(((((.....(((((((((((((((..((((((((((.(((...((....))..))).))))))))))..)))))))))))
)))).)))))..)))))))..))).))))...
SIMILARITIES| miRBase tae-MIR1126: 0.000006 PMRD osa-miRf11316-akr: 0.0000004 microPC miR1436: 0.000000000000002 | UniProt no hits RFAM MIR1122: 0.0000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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