ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIRf1219
source: miRNEST
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGACGAAGTCACTGGCGGAG miRNA* CCGCCGGAGACCTCTCCCTT mismatches: 4 bulges: 1 |
pre-miRNA
TCTCTCTTCTTACCTTCTTCAAACCCTACATCCATCTTCCGAGCTCGCGCCTCCGCCGGAGACCTCTCCCTTCCTCGCTTCTTTCACTCCCTCGCTTCCG
CCGCCGCCGTTGCCGGCGGTCTAGGAGCAGCTGGCGGAGGAGGAGCCTCCGACGAAGTCACTGGCGGAGCAGCAGCGAGGCGCGGTGGCGGGAACGAGGG
GAAGATGAAACTGAAGGC
dot-bracket secondary structure
....(((((......(((((...((((...(((..((.(((.(((((((((((((((((.(((.((((........(((((((...((((((.((((((.
..(((((((....)))))))...)))..))).)).)))))))))))....)).)).))).)))))))))..)).)))).)).))).))..)))...))))
))))).......))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTCTCTTCTTACCTTCTTCAAACCCTACATCCATCTTCCGAGCTCGCGCCTCCGCCGGAGACCTCTCCCTTCCTCGCTTCTTTCACTCCCTCGCTTCCG
CCGCCGCCGTTGCCGGCGGTCTAGGAGCAGCTGGCGGAGGAGGAGCCTCCGACGAAGTCACTGGCGGAGCAGCAGCGAGGCGCGGTGGCGGGAACGAGGG
GAAGATGAAACTGAAGGC
dot-bracket secondary structure
....(((((......(((((...((((...(((..((.(((.(((((((((((((((((.(((.((((........(((((((...((((((.((((((.
..(((((((....)))))))...)))..))).)).)))))))))))....)).)).))).)))))))))..)).)))).)).))).))..)))...))))
))))).......))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
