ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
ATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAGTCATACACAAAGCAAGAATCGGTC
GATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTT
dot-bracket secondary structure
....(((...(((...(((((((((.((..(((((.((((.((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..))))
))).)))).)))).))))).)))))))))))....))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTAGCGTATGAATTTGTAAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAGTCATACACAAAGCAAGAATCGGTC
GATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTTTTTCGTGTTTTT
dot-bracket secondary structure
....(((...(((...(((((((((.((..(((((.((((.((((.(((((((..(((.((..((((..((((....))))..)))).)).)))..))))
))).)))).)))).))))).)))))))))))....))).)))......
SIMILARITIES| miRBase vvi-MIR162: 8e-18 PMRD vvi-miR162: 8e-18 microPC miR162: 2e-31 | UniProt no hits RFAM MIR162_2: 0.00000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
