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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST001237
species:
Hordeum vulgare
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TATAGTACTCCCTCCGTCCGG
miRNA*
GAACAGAGGGAGTATTACAAA
mismatches:
5
bulges:
0
View larger
pre-miRNA
GTCGATGCTTA
TATAGTACTCCCTCCGTCCGG
AAATACTTGTTCTAGAAATGTTTGTTCTAGAAATGTACAAAATGGACGTATCTCCATAACTAAAATAA
ATCTAGATACATCTATTTCTAGGACAAGTATTTAT
GAACAGAGGGAGTATTACAAA
AGGACTTG
dot-bracket secondary structure
...........
..((((((((((((.((.((.
((((((((((((((((((((..(((((((((..........(((((......)))))...........
.)))))).)))..)))))))))))))))))))).)
).)).))))))))))))....
........
SIMILARITIES
miRBase
tae-MIR1135
:
0.000000009
PMRD
tae-miR1135
:
0.000000009
microPC
miR1133
:
0.000000000002
UniProt
no hits
RFAM
MIR1122: 6e-75
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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