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Species belonging to selected taxon:

Ipomoea batatas, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001274
species: Ipomoea batatas
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
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pre-miRNA
 ATGTGTGTTGCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAGC
TCCCGCCTTGCATCAACTGAATCGGAGCCCGCGGTGAATTGTT

dot-bracket secondary structure
....(..((((.((((.((((.(((((.((((((((((.(((((.(((....((((((..((.(((.((((....)))).))))).))))))....))).
))))).)))))))))).))))).)))).)))).))))..)...


SIMILARITIES
miRBase crt-MIR168: 0.000000000000008

PMRD rco-miR168: 0.000000000000008

microPC miR168: 2e-49		UniProt no hits

RFAM MIR168: 0.0000000000001		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST046717)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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